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Table 2 Comparison of Trichinella genotyping results generated using mPCR and NGS for L1 samples from wildlife and other host species

From: Identification of Trichinella taxa by ITS-1 amplicon next-generation sequencing with an improved resolution for detecting underrepresented genotypes in mixed natural infections

Host species

Number of animals

Complete agreement

Extra taxa identified by

NGS

mPCR

Badger (Taxidea taxus)

3

3

  

Black Bear (Ursus americanus)

2

2

  

Brown Bear (Ursus arctos)*

2

2

  

Cat (Felis catus; stray)*

1

1

  

Cougar (Puma concolor cougar)

25

23

2

 

Coyote (Canis latrans)

10

10

  

Dog (Canis lupus familiaris; stray)*

1

  

1

Fisher (Pekania pennanti)

8

6

2

 

Grizzly Bear (Ursus arctos horribilis)

1

1

  

Himalayan Black Bear (Ursus thibetanus laniger)*

1

1

  

Lynx (Lynx canadensis)

1

 

1

 

Marten (Martes americana)

1

 

1

 

Raccoon (Procyon lotor)

1

1

  

Raccoon Dog (Nyctereutes procyonoides)*

2

2

  

Red Fox (Vulpes vulpes)

19

18

1

 

Wolf (Canis lupus)§

20

17

 

3

Wolverine (Gulo gulo)

9

5

4

 

Total

107

92 (86%)

11 (10.3%)

4 (3.7%)

  1. *L1 isolate(s) from Russia
  2. §Includes one L1 isolate from Russia