Fig. 3

Whole-genome neighbor-joining trees of Strongyloides stercoralis. A Comparison of the Iranian samples with published sequences from Asia. Cn-209 is an individual from a possibly asexual population in Southern China [19], ERR422406 is one individual of the USA-derived reference isolate [35]. Samples starting with Rk are from Japan [36], new Iranian samples are highlighted in green, and all other samples are from Southeast Asia and are the same as in Fig. 2 of [16]. B Iranian samples only. The corresponding cox-1 haplotypes are color-coded. The SSU HVR-I haplotype is indicated. PX: patient [number]. C Neighbor-joining trees based on the four largest contigs (genome assembly from Hunt et al. [35]). The resolution is very limited, but examples (one highlighted in blue) with different topology are visible, indicating at least occasional meiotic recombination