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Table 4 Codon usage for the 12 mitochondrial proteins of Paragyrodactylus variegatus

From: The mitochondrial genome of Paragyrodactylus variegatus (Platyhelminthes: Monogenea): differences in major non-coding region and gene order compared to Gyrodactylus

Codon(AA)

N

%

RSCU

Codon(AA)

N

%

RSCU

UUU(F)

381

11.48

1.74

UAU(Y)

180

5.42

1.72

UUC(F)

58

1.75

0.26

UAC(Y)

29

0.87

0.28

UUA(L)

401

12.09

4.41

UAA(*)

0

0.00

0

UUG(L)

39

1.18

0.43

UAG(*)

0

0.00

0

CUU(L)

68

2.05

0.75

CAU(H)

45

1.36

1.7

CUC(L)

7

0.21

0.08

CAC(H)

8

0.24

0.3

CUA(L)

27

0.81

0.3

CAA(Q)

14

0.42

1.22

CUG(L)

3

0.09

0.03

CAG(Q)

9

0.27

0.78

AUU(I)

175

5.27

1.48

AAU(N)

103

3.10

1.67

AUC(I)

11

0.33

0.09

AAC(N)

18

0.54

0.29

AUA(I)

168

5.06

1.42

AAA(N)

64

1.93

1.04

AUG(M)

68

2.05

1

AAG(K)

48

1.45

1

GUU(V)

150

4.52

2.4

GAU(D)

54

1.63

1.59

GUC(V)

8

0.24

0.13

GAC(D)

14

0.42

0.41

GUA(V)

81

2.44

1.3

GAA(E)

37

1.12

1.32

GUG(V)

11

0.33

0.18

GAG(E)

19

0.57

0.68

UCU(S)

114

3.44

2.2

UGU(C)

65

1.96

1.83

UCC(S)

9

0.27

0.17

UGC(C)

6

0.18

0.17

UCA(S)

65

1.96

1.26

UGA(W)

58

1.75

1.55

UCG(S)

3

0.09

0.06

UGG(W)

17

0.51

0.45

CCU(P)

38

1.15

2.03

CGU(R)

33

0.99

3

CCC(P)

2

0.06

0.11

CGC(R)

4

0.12

0.36

CCA(P)

34

1.02

1.81

CGA(R)

5

0.15

0.45

CCG(P)

1

0.03

0.05

CGG(R)

2

0.06

0.18

ACU(T)

58

1.75

2.37

AGU(S)

104

3.13

2.01

ACC(T)

9

0.27

0.37

AGC(S)

12

0.36

0.23

ACA(T)

30

0.90

1.22

AGA(S)

81

2.44

1.57

ACG(T)

1

0.03

0.04

AGG(S)

26

0.78

0.5

GCU(A)

33

0.99

1.97

GGU(G)

90

2.71

2.05

GCC(A)

7

0.21

0.42

GGC(G)

18

0.54

0.41

GCA(A)

25

0.75

1.49

GGA(G)

46

1.39

1.05

GCG(A)

2

0.06

0.12

GGG(G)

22

0.66

0.5

  1. A total of 3318 codons for P. variegatus were analyzed, excluding the stop codons. AA, amino acid; N, number of used codon; % = N/3318; RSCU, relative synonymous codon usage.