Table 4 Accession numbers of the reference 18S and 28S rDNA sequences and their species information used for phylogenetic analysis with those derived from Opisthorchis sp. BD2013 in ducks in the present study
Family/Species | 18S rDNA GenBank ID (isolate)b | 28S rDNA GenBank ID (isolate)b | Origin of sequences | Reference |
|---|---|---|---|---|
Opisthorchiidae | ||||
Opisthorchis sp. | MF077358 (PC6aduBD)b | MF110001 (PC6aduBD) | Vietnam | This study |
MF077359 (PCcercaBD) | MF110002 (PCcercaBD) | Vietnam | This study | |
MF077360 (PCeggBD) | MF110003 (PCeggBD) | Vietnam | This study | |
MF077361 (PCmetaBD) | MF110004 (PCmetaBD) | Vietnam | This study | |
MF077362 (PM10aduBD) | MF110005 (PM10aduBD) | Vietnam | This study | |
Opisthorchis viverrini | HM004211 (SK) | HM004188 (SK); | Thailand | [30] |
JF823987 (THASK) | JF823990 (THASK) | Thailand | [17] | |
MF077364 (PY2) | MF099792 (PY2) | Vietnam | GenBank | |
MF077363 (BD1) | KY369165 (BD1) | Vietnam | GenBank | |
Opisthorchis felineus | MF077357 (Ust-Tula) | MF099790 (Ust-Tula) | Russia | GenBank |
Clonorchis sinensis | JF823988 (VNM) | JF823989 (VNM) | Vietnam | [30] |
JF314770 (GD) | JF823989 (VNM) | China; Vietnam | GenBank; [30] | |
MF077353 (NH) | MF099784 (NH) | Vietnam | GenBank | |
Heterophyidae | ||||
Haplorchis pumilio | HM004194 (HpNP1) | HM004186 (HpNP1) | Thailand | [18] |
KX815125 (HPU8) | KX815125 (HPU8) | Vietnam | [12] | |
Haplorchis taichui | KX815126 (QT3) | KX815126 (QT3) | Vietnam | [12] |
HM004201 (NA3) | HM004187 (NA3) | Thailand | [30] | |
Haplorchis yokogawai | HM004207 (CP1) | HM004178 (CP1) | Thailand | [18] |
HM004208 (CP2) | KY369160 (An394) | Thailand; Vietnam | ||
Procerovum varium | HM004199 (PvNP1) | HM004182 (PvNP1) | Thailand | [30] |
MF077365 (HspND) | KY369161 (HspND) | Vietnam | GenBank; [12] | |
Stellantchasmus falcatus | HM004202 (VN1) | HM004174 (VN1) | Vietnam | [17] |
MF077366 (QN2) | KY369164 (QN2) | Vietnam | [12] | |
Metagonimus takahashii | HQ832629 (Mt3) | HQ832638 (Mt3) | Japan | [31] |
Metagonimus yokogawai | HQ832630 (My1) | HQ832639 (My1) | Japan | [31] |
Metagonimus miyatai | HQ832626 (Mm3) | HQ832635 (Mm3) | Japan | [31] |
Fasciolidae | ||||
Fasciolopsis buski | AY311386 (Vinh) | EU025870 (NA) | Vietnam | [32] |
Fasciola gigantica | MF077354 (NB) | MF099787 (NB) | Vietnam | GenBank |
Fasciola hepatica | MF077355 (Geelong) | MF099788 (Geelong) | Australia | GenBank |
Fascioloides magna | EF051080 | EU025872 | United States | GenBank; [33] |
Schistosomatidae | ||||
Schistosoma haematobium a | Z11976 | AY157263 | Mali | |