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Molecular identification and biological characterization of Cryptosporidium muris from camels (Camelus bactrianus) in China



Cryptosporidium is an opportunistic pathogen that infects a wide variety of vertebrates. The aim of the present study was to characterize Cryptosporidium spp. isolates from Bactrian camels and to foster further understanding of the biological characteristics of the pathogen.


Fecal specimens were collected from two 4-year-old Bactrian camels resident at the Kaifeng City Zoo in China and examined for Cryptosporidium. Fecal specimens were screened using the floatation method, and then genomic DNA was extracted from the oocysts and identified by nested-PCR amplification of the small subunit ribosomal RNA (SSU rRNA) gene, the actin gene and the Cryptosporidium oocyst wall-protein (COWP) gene. Subtype analysis was performed based on four minisatellite (MS) loci (MS1, MS2, MS3 and MS16) that were aligned and phylogenetically analyzed to determine the species and subtype of Cryptosporidium. We then established a BALB/c mice infection model and further verified the results through clinical status, pattern of oocyst excretion and histological examination.


Cryptosporidium oocyst isolates from the two Bactrian camels had an average (± standard deviation) size of 7.49 ± 0.13 × 5.70 ± 0.10 μm (n = 50). The sequencing and phylogenetic analysis confirmed the species as C. muris. Multilocus sequence typing analysis indicated that the subtypes were M13, M4, M1 and M5. Following the inoculation of BALB/c mice, we found that the prepatent period and number of oocysts per gram increased with increasing infective dose. Oocysts were first detected in the feces of BALB/c mice at 7–8 days post-infection (dpi), with levels peaking twice thereafter, at 15–16 dpi and 19–20 dpi. Histology and scanning electron microscopy studies showed that the stomach contained gastric pits filled with Cryptosporidium that adhered to the surface of gastric mucosa gland epithelial cells, causing the latter to deform, swell and become disordered.


The findings of this study indicated that oocysts isolated from Bactrian camels were from C. muris. This is the first report of C. muris isolated from camels in China. More epidemiological data are needed to understand the prevalence and transmission of C. muris in camels in different geographic areas.

Graphical abstract


Cryptosporidiosis is a common and widely distributed zoonotic disease of significant public health concern worldwide that is caused by a species of the genus Cryptosporidium. The parasite has multiple vertebrate hosts, including humans, and cryptosporidiosis is one of the most common causes of diarrheal diseases in humans and domestic animals [1, 2]. According to molecular analyses and morphological data, 46 Cryptosporidium species and > 100 Cryptosporidium genotypes have been identified so far in various hosts [3].

Molecular diagnostic methods have long been an important tool for studying the transmission of Cryptosporidium spp. [4]. One of the drivers of this strategy is that different Cryptosporidium species and genotypes have a certain degree of morphological similarity, making identification by conventional microscopic examination difficult. This difficulty has resulted in the development of a nested-PCR molecular diagnostic tool based on polymorphism of the small ribosomal subunit (SSU) gene. Cryptosporidium muris and C. andersoni are the most common gastric Cryptosporidium species. Due to the strong similarity between these two species in terms of their genetics and biology, researchers have developed a multiocus sequence typing (MLST) tool using polymorphic microsatellites and microsatellite repeat markers to distinguish between them [5]. This method has been used effectively for characterizing the population genetics of C. muris and C. andersoni [6].

In 1907, Ernest Edward Tyzzer discovered a parasite in the gastric glands of laboratory mice and named it Cryptosporidium muris [7]. The parasite was able to infect a variety of mammals, including various rodent species [8, 9], cats, dogs [10], crab-eating macaques [11], deer [12], horses [13], mountain goats, Bactrian camels and humans [14]. Studies conducted on the life-cycle of C. muris found that all stages were localized in the gastric glands of the stomach [15]. An ostrich-derived C. muris model of experimental infection has been developed to study cross-transmission [16]. However, cryptosporidiosis caused by other animal-derived C. muris infection has not yet been reported.

In this study, Bactrian camel (Camelus bactrianus) stool samples were diagnosed to be Cryptosporidium positive, and we examined oocyst morphology and molecular characteristics of this Cryptosporidium isolate from the camels. To further understand the pathogenicity and infectivity of this Cryptosporidium isolate, we developed a mouse infection model that provides a foundation for future testing of novel drugs or vaccines against cryptosporidiosis.


Source of oocysts

Fecal specimens from two 4-year-old female Bactrian camels were collected in December 2018 from the Kaifeng City Zoo in China. The Cryptosporidium-positive specimens were evaluated for the presence of Cryptosporidium oocysts by Sheather’s sugar floatation method [17]. We collected the Cryptosporidium oocysts from the feces using the water/ether concentration method [18] and purified the samples by discontinuous sucrose density centrifugation [19]. Oocysts were counted with a Neubauer hemocytometer. Micrographs of the purified Cryptosporidium oocysts were obtained using differential interference contrast microscopy. A combination of streptomycin and penicillin was added, and the oocysts were stored in phosphate-buffered saline (PBS) at 4 °C.

Morphometric analyses of Cryptosporidium oocysts were performed using an image digital analysis method (Motic Images Plus 2.0 software). The oocysts (n = 50) were randomly selected under an Olympus microscope at 1000-fold magnification, and their lengths and widths were measured [20].

DNA extraction and sequence analysis

Genomic DNA was extracted from oocysts using commercial E.Z.N.A Stool DNA kits (Omega Bio-Tek Inc., Norcross, GA, USA). The oocysts were first suspended in lysis buffer and kept on ice for 30 min, then frozen in liquid nitrogen for 3 min before thawing in a 37 °C water bath; the process was repeated six times. Extracted DNA samples were stored at − 20 °C until PCR analysis.

The DNA samples were analyzed by nested-PCR amplification of the SSU rRNA gene, the actin gene and the Cryptosporidium oocyst wall-protein gene (COWP gene) following previously published protocols [21,22,23,24], to determine the species of the Cryptosporidium isolates in this study. For the SSU fragment, the external PCR primers were 5′-TTCTAGAGCTAATACATGCG-3′ and 5′-CCCATTTCCTTCGAAACAGGA-3′; the internal PCR primers were 5′-GGAAGGGTTGTATTTATTAGATAAAG-3′ and 5′-AAGGAGTAAGGAACAACCTCCA-3′. For the actin fragment, the external PCR primers were 5′-ATGCCVGGWRTWATGGTDGGTATG-3′ and 5′-GGDGCAACRACYTTRATCTTC-3′; the internal PCR primers were 5′-GAYGARGCHCARTCVAARAGRGGTAT-3′ and 5′-TTDATYTTCATDGTHGAHGGWGC-3′. For the COWP fragment, the external PCR primers were 5′-GAATGTCCTCCTGGGACTGTA-3′ and 5′-AGTTCCTGGTGGACATACTG-3′; the internal PCR primers were 5′-TCCTCCTGGGACTGTATTGG-3′ and 5′-GGTGGACATACTGGTTGTGTTG-3′. Subtype identification and analysis were performed based on four C. muris (CM) minisatellite (MS) gene loci: CM-MS1, CM-MS2, CM-MS3 and CM-MS16 [5, 25]. The primers and amplification conditions used in MLST subtype analysis of MS1 (coding for the hypothetical protein CMU_036310), MS2 (coding for heat shock protein), MS3 (coding for the hypothetical protein CMU_020660) and MS16 (coding for the leucine-rich repeat family protein CMU_035650) genes were as previously described [5]. The nucleotide sequences of the partial SSU rRNA, actin, COWP and MLST subtype genes of C. muris from the Bactrian camels were deposited in the GenBank database under accession numbers MT708027 and MT721871–MT721876.

Phylogenetic analysis

The secondary PCR products were sent to Zhengzhou QingCheng Biotechnology Co. Ltd. for double-end sequencing (ABI PRISM 3730 XL DNA Analyzer; Applied Biosystems, Thermo Fisher Scientific, Foster City, CA, USA ). The sequencing results were corrected according to the sequencing map. After the splicing was completed, a homology sequence search was performed on GenBank, and the software Clustal X 2.13 ( was used for comparison and analysis to determine Cryptosporidium species. Then MLST was used for subtype identification.

In this study, Mega 7.0 ( software was used to build evolutionary trees for different gene loci, and the neighbor-joining algorithm was used to conduct a phylogenetic analysis with 1000 bootstrap replicates based on evolutionary distances calculated by the Kimura two-parameter model.

Experimental design

Experimental animals

Fifteen 4-week-old female BALB/c mice were obtained from Henan Experimental Animal Center, Zhengzhou, China. All mice were housed individually in plastic cages with wire mesh tops under pathogen-free conditions, kept on daily 12/12-h light/dark cycles and supplied with sterilized food and water. The plastic cages were disinfected with pressurized steam before use. Mice were randomly divided into a control group and two test groups, with five mice per group. In order to know whether there were differences in oocyst excretion at different doses of infection, each mouse in the two test groups was orally inoculated by stomach tube with either 1 × 106 or 3 × 106 Cryptosporidium oocysts suspended in 200 μl of distilled water. Each mouse in the control group was inoculated with an equal dose of distilled water. All experimental procedures complied with the recommendations of the Guide for the Care and Use of Laboratory Animals of the Ministry of Health, China.

Clinical status

Shape and color of fecal matter and clinical status of the mice were observed daily for each group sample and for each mouse, respectively. Rectal temperature, breathing, appetite and presence of any abnormal behaviors were recorded.

Oocyst excretion

Fresh fecal samples from each group of mice were collected daily after infection to determine the prepatent period (malachite green stain), and the experiments were terminated when no Cryptosporidium oocysts could be detected under the microscope. Cryptosporidium oocysts were isolated from fecal samples using Sheather’s sugar floatation method [17], and the number of oocysts per gram (OPG) of feces was counted using a hemocytometer slide. Each group sampling was repeated three times to calculate an average value. Number of OPG was estimated according to the number of oocysts counted and a curve diagram of oocyst excretion [26].

Histological examination

For histological analysis, one mouse in each group was euthanized by cervical dislocation at day 14 post infection (dpi), and tissue samples harvested from the duodenum, jejunum, ileum, cecum, stomach, lungs, liver, spleen and kidney were fixed in 10% neutral buffered formalin for 24 h at room temperature as described previously [27]. After being dehydrated in different concentrations of ethanol and cleared in xylene, the tissues were embedded in paraffin and then sectioned and stained with hematoxylin and eosin (H&E). The stained slides were observed under a microscopte at 400× and 1000× magnification [28].

Scanning electron microscopy

In order to better observe and further confirm the colonization of Cryptosporidium in mice, stomach tissue samples from mice in the two treatment groups were observed by scanning electron microscopy (SEM) based on the histological observation results. The samples were first fixed in 2.5% glutaraldehyde at 4 °C for 1 week, followed by dehydration in an ethanol gradient series (30, 50, 70, 80 and 90% ethanol) and two additional changes in 100% ethanol, each for 15 min. This was followed by immersion in 100% isoamyl acetate solution twice for 20 min. The samples were critical point-dried using CO2, coated with gold and observed using a scanning electron microscope (Qunata FEG 250, FEI Co., Thermo Fisher Scientific, Hillsboro, OR, USA) [20, 27].

Statistical analysis

Differences in oocyst sizes were tested using the chi-square test in SPSS (release 13.0 standard version; SPSS-IBM Corp., Armonk, NY, USA), and differences were considered to be statistically significant at p < 0.05.


Morphological measurements

The oocysts of Cryptosporidium were ellipsoidal and lacked sporocysts. The mean size (± standard deviation) of the oocysts was 7.49 ± 0.13 × 5.70 ± 0.10 μm, with a length/width ratio of 1.32 (n = 50). The micrographs of the purified Cryptosporidium oocyst are shown in Fig. 1.

Fig. 1
figure 1

Cryptosporidium muris oocysts from Bactrian camels examined under differential interference contrast microscopy settings. Scale bars: 10 μm

Molecular characterization

For each of the gene targets, sequences of the Cryptosporidium isolates were aligned with those from other C. muris isolates using Clustal X 2.13 [29]. DNA sequencing indicated that the SSU rRNA nucleotide sequences had 96% similarity with those of C. muris (GenBank accession number EU245044 in the Czech Republic and AJ307669 in Kenya). The isolates formed a cluster with C. muris (CM), while the COWP and actin nucleotide sequences had 100% similarity with those of C. muris (GenBank accession numbers KF419210 and KJ746834 in China, respectively) (Fig. 2a–c). Subtype identification of this C. muris isolate was successfully performed at all four loci; as the CM-MS1 locus had significant differences, it was named as a new subtype: M13. The CM-MS16 locus base sequence differed by only one base and, therefore, the C. muris isolate formed a new C. muris MLST subtype: M13, M4, M1, M5 (Fig. 3).

Fig. 2
figure 2

Phylogenetic relationships of Cryptosporidium parasites inferred by neighbor-joining analysis of the 18S rRNA (a) actin genes (b) and Cryptosporidium oocyst wall protein (COWP; c) based on the Kimura two-parameter model

Fig. 3
figure 3

Phylogenetic relationships among subtypes of camel-derived C. muris isolates at four microsatellite and minisatellite (MS) loci (MS1, MS2, MS3, and MS16) as assessed by a neighbor-joining analysis of the nucleotide sequences, using distance calculated by the Kimura two-parameter model

Clinical status of mice

The appetites and attitudes of all animals in both the test and control groups were normal during the experiment. All animals remained free of clinical signs, without changes in fecal traits, appetite, hair quality, or behavior. No remarkable changes were observed in macroscopic observations, and no diarrhea was observed in any infected animal. In addition, no animals died during the experiment.

Oocyst shedding in infected mice

Fecal examination showed that Cryptosporidium oocysts were found only in the feces of mice inoculated with Cryptosporidium oocysts. No Cryptosporidium oocysts were found in control animals during the experiment. Oocysts were first detected in feces of the two infected groups by light microscopy on 7 and 8 dpi, peaking twice on 15 and 16 dpi; all animals remained infected until 27 dpi (Fig. 4). The infection intensity of the group infected with 3 × 106 oocysts ranged from 1000 to 160,000 OPG, with maximum shedding at 15 dpi, and the infection intensity of the group infected with 1 × 106 oocysts ranged from 1000 to 62,500 OPG with maximum shedding at 16 dpi. The group infected with 3 × 106 oocysts entered the prepatent and peak periods earlier than the group infected with 1 × 106 oocysts. Both infected groups had no detectable Cryptosporidium oocysts in feces after 27 dpi. The patterns of oocyst shedding in mice in the infected groups are shown in Fig. 4.

Fig. 4
figure 4

Excretion of oocysts in 1 g of feces in all mice infected with 1 × 106 C. muris oocysts and infected with 3 × 106 C. muris oocysts during the experiment. Arithmetic means of all the examined animals are shown. The gray line indicates the group of mice infected with 1 × 106 C. muris oocysts. The black line indicates the group of mice infected with 3 × 106 C. muris oocysts. OPG Oocytes per gram

Histological observations

Histological examination of the tissue sections showed that Cryptosporidium parasitized the stomach tissues of infected mice (Fig. 5). No Cryptosporidium developmental stages or pathological changes were observed at any other anatomical site, including the duodenum, jejunum, ileum, cecum, lungs, liver, spleen and kidney; these findings were consistent for all infected mice in the study. Likewise, no Cryptosporidium developmental stages or pathological changes were observed at any anatomical site in mice of the control group (Fig. 5a). In the two treatment groups, the histopathological changes of the stomach included opened and enlarged gastric pits that were filled with necrotic material, mucus and numerous parasite stages. The majority of the gastric glandular parts were clearly affected; the pathological changes in the group infected with 3 × 106 oocysts were more serious, and the changes included the extension of gastric longitudinal folds, epithelial hyperplasia and mucosal hypertrophy (Fig. 5b, c), while the non-glandular parts were unchanged.

Fig. 5
figure 5

Observations of pathological sections of stomach tissue of BALB/c mice stained with hematoxylin and eosin. a Longitudinal section of gastric epithelium, negative control. b, c Gastric pits (arrow) in stomach tissue sections of BALB/c mice infected with 1 × 106 oocysts (b) and 3 × 106 oocysts (c) of C. muris (arrow) which were sacrificed 14 days post-infection. A scale bar is included in each figure

Scanning electron microscopy

The SEM study showed that Cryptosporidium adhered to the surfaces of epithelial cells in the glandular part of the gastric mucosa (Fig. 6). The gastric surface of the glandular part was clearly deformed due to the strong pathological changes; the surfaces of epithelial cells were swollen and disordered and filled with necrotic material. A large number of Cryptosporidium could be found attached to the superficial epithelium outside the gastric pits.

Fig. 6
figure 6

Scanning electron microscopy observations of BALB/c mice infected with 1 × 106 oocytes of C. muris (a) and with 3 × 106 of C. muris (b). C. muris adhered to the surfaces of epithelial cells in the glandular part of the gastric mucosa (a, b, 5000×) (arrows). The surfaces of the epithelial cells were swollen and disordered. The integrity of the mucosal layer of the gastric glandular had been damaged, and many cilia had fallen off or atrophied


Cryptosporidium infection in camels has become an increasingly important source of zoonotic disease transmission to humans, especially in communities with poor sanitation and inadequate medical facilities [30]. In recent years, there have been many reports worldwide of camel infections caused by different Cryptosporidium species, including C. parvum, C. hominis, C. andersoni, C. occultus, C. bovis, C. ubiquitum, C. muris, Cryptosporidium rat genotype IV and camel genotypes [30,31,32,33,34]. In China, C. parvum, C. hominis, C. ubiquitum, C. occultus, C. bovis and C. andersoni have been found to be infecting camels [25, 34, 35]. In this study, we first reported a C. muris isolate from Bactrian camels by sequence analyses and then verified its identity through infectivity and parasitic sites via experimental infection of laboratory animals.

Previous studies have shown that C. muris oocysts are ellipsoidal and lack sporocysts. The size of the oocysts from the strain isolated from camels in our study are similar to that reported previously for C. muris (7 × 5 μm) [15]. In the phylogenetic analyses of the SSU rRNA, actin and COWP genes, the Cryptosporidium isolates formed a cluster with C. muris. DNA sequencing showed that the camel C. muris isolates at the COWP and actin loci had 100% identity with the C. muris RN66 isolate and had 96% identify with the camel and human C. muris isolates at the SSU rRNA loci. Genetically, the Cryptosporidium isolates derived from the Bactrian camels in China belong to C. muris. Interestingly, the C. muris isolate formed a new MLST subtype: M13, M4, M1, M5. The present C. muris MLST subtype clearly differs from previous multilocus sequences based on the MS1, MS2, MS3, and MS16 loci that have been found in other C. muris isolate subtypes: a camel-derived subtype (M5, M4, M2, M3) from Egypt [5], a Bactrian camel-derived C. muris subtype (M1, M1, M4, M5) from the Czech Republic [5], an ostrich-derived C. muris subtype (M5, M4, M6, M4) from China [25] and a human-derived C. muris subtype (M1, M2, M4, M5) from Peru [36]. These differences may reflect co-evolution of hosts and parasites, which led to different biological characteristics [5]. This is the first report of C. muris in Bactrian camels in China, although C. muris spp. have been reported in Bactrian camels in other countries [33].

In our study, no oocysts were observed in control mice, and Cryptosporidium oocysts were found in the feces of experimental mice inoculated with oocysts in both treatment groups. Infected mice began to shed small numbers of oocysts on 7–8 dpi, with two peaks in infection intensity during the exposure period. The oocysts lasted 27 days, consistent with previous studies [16, 28, 37], but different from the study of C. muris CB03 isolated from BALB/c mice infected with Camelus bactrianus [38]. The difference in the prepatent and patent periods may depend on the specific Cryptosporidium species and experimental animals [20]. The infected mice did not show diarrhea in our study, which is in agreement with the results reported by Qi et al. [16], who inoculated 106 oocysts of C. muris isolated from ostriches into BALB/c mice and Mongolian gerbils, and the study by Anderson [39], who inoculated oocysts of C. muris isolated from camels. The mice in different infection dose groups showed no clinical symptoms. The prepatent period advanced as the infective dose increased, and OPG also increased, similar to the previously observed pattern in mice infected with C. muris RN66 [40].

In this study, histological sections and SEM studies were used to observe the developmental stages of Cryptosporidium in the gastric mucosa epithelium. As expected, a large number of Cryptosporidium were found only in the gastric glandular sections, consistent with the colonization of mouse- and camel-derived C. muris [39, 41]. While the stomach is composed of non-glandular and glandular sections, the endogenous developmental stage of C. muris is limited to the glandular part, a pattern that has previously been observed in mice infected with C. muris RN66 [40]. Observed histopathological changes showed the presence of gastric pits filled with Cryptosporidium at numerous developmental stages. Morever, there was an extension of the gastric longitudinal fold. SEM observations showed that C. muris adhered to the surfaces of the epithelial cells of the gastric mucosa gland; the cells were clearly deformed, and the surfaces of the epithelial cells were swollen and disordered, findings that have previously been observed in BALB/c mice infected with C. muris CB03 [38]. This study demonstrated that the parasitic site of C. muris is the gastric glandular section, consistent with previous results [5, 16, 41].


In conclusion, we identified the species of Cryptosporidium from camels as C. muris through molecular identification and animal experiments. The clinical status and parasitic site of camel-derived C. muris were similar to those of mouse-derived C. muris, but different in the pattern of oocyst excretion, suggesting that the parasite presents a zoonotic risk. We established an animal infection model of C. muris and studied the parasitological and histopathological characteristics of infected mice. However, how the parasite infects camels, the parasitized sites in camels and the mechanism of zoonotic transfer need further study.

Availability of data and materials

Data supporting the conclusions of this article are included within the article. Nucleotide sequences were deposited in the GenBank database under the accession numbers MT708027, and MT721871 to MT721876.



Cryptosporidium oocyst wall protein




Oocysts per gram


Small-subunit ribosomal RNA


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We thank LetPub ( for its linguistic assistance during the preparation of this manuscript.


This study was supported in part by the Higher Education Teaching Reform Research and Practice Project of Henan Province in 2019 (2019SJGLX006Y), National Key Research and Development Program of China (2017YFD0501305, 2019YFC1605700), and the Leading talents of the Thousand Talents Program of Central China (19CZ0122). The sponsors played no role in the study design, in the collection, analysis, or interpretation of the data, in writing the report, or in the decision to submit the article for publication.

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LZ and SZ conceived and designed the experiments. SZ and LC performed the experiments and analyzed the data. LW, YC and KZ collected samples. ZS and YW assisted in sampling. LW and LZ wrote the paper. LW and ZS took the photographs. All authors read and approved the final manuscript.

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Correspondence to Sumei Zhang or Longxian Zhang.

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This study was performed in accordance with the recommendations of the Guide for the Care and Use of Laboratory Animals (Publication Year: 2010, ISBN: 9780309154000). The research protocol was reviewed and approved by the Research Ethics Committee of Henan Agricultural University (authorization number IACUC-henau-20190505).

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Wang, L., Cao, L., Zheng, S. et al. Molecular identification and biological characterization of Cryptosporidium muris from camels (Camelus bactrianus) in China. Parasites Vectors 14, 365 (2021).

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