Table 1 Overview of the mapping of RNA sequencing reads
Sample name | Accession number | Total reads | Trimmed paired reads | Trimmed reads mapped to the genome | Mapping rate (%) |
|---|---|---|---|---|---|
CT23-1 | SRR16503765 | 54,772,829 | 43,027,438 | 44,830,001 | 81.85 |
CT23-2 | SRR16503764 | 53,395,633 | 42,115,248 | 43,759,069 | 81.95 |
CT23-3 | SRR16503753 | 54,865,514 | 43,008,208 | 45,189,103 | 82.36 |
CT28-1 | SRR16503745 | 55,807,603 | 42,799,344 | 45,686,153 | 81.86 |
CT28-2 | SRR16503744 | 54,595,956 | 42,754,238 | 44,446,199 | 81.41 |
CT28-3 | SRR16503743 | 55,657,054 | 43,167,914 | 45,847,667 | 82.38 |
CT32-1 | SRR16503742 | 54,596,339 | 43,143,450 | 44,902,572 | 82.24 |
CT32-2 | SRR16503741 | 54,575,842 | 43,233,636 | 44,911,335 | 82.29 |
CT32-3 | SRR16503740 | 53,828,160 | 43,116,042 | 44,519,031 | 82.71 |
MB23-1 | SRR16503739 | 55,680,172 | 43,272,084 | 45,751,800 | 82.17 |
MB23-2 | SRR16503763 | 55,593,162 | 43,166,298 | 46,254,004 | 83.20 |
MB23-3 | SRR16503762 | 53,854,014 | 43,234,376 | 43,751,782 | 81.24 |
MB28-1 | SRR16503761 | 54,532,721 | 42,916,424 | 44,240,737 | 81.13 |
MB28-2 | SRR16503760 | 55,082,520 | 43,313,808 | 45,303,233 | 82.25 |
MB28-3 | SRR16503759 | 53,442,771 | 42,876,264 | 43,282,494 | 80.99 |
MB32-1 | SRR16503758 | 54,496,832 | 43,216,764 | 44,790,010 | 82.19 |
MB32-2 | SRR16503757 | 54,009,938 | 43,101,818 | 44,081,104 | 81.62 |
MB32-3 | SRR16503756 | 53,385,010 | 42,789,656 | 43,476,908 | 81.44 |
MNB23-1 | SRR16503755 | 55,517,642 | 42,595,030 | 46,663,792 | 84.05 |
MNB23-2 | SRR16503754 | 54,594,901 | 42,346,994 | 44,982,402 | 82.39 |
MNB23-3 | SRR16503752 | 55,500,160 | 42,492,630 | 46,458,788 | 83.71 |
MNB28-1 | SRR16503751 | 56,410,592 | 43,144,664 | 47,226,360 | 83.72 |
MNB28-2 | SRR16503750 | 54,893,018 | 43,252,930 | 45,876,636 | 83.57 |
MNB28-3 | SRR16503749 | 54,651,677 | 42,863,124 | 45,496,019 | 83.25 |
MNB32-1 | SRR16503748 | 55,653,684 | 43,066,758 | 45,287,828 | 81.37 |
MNB32-2 | SRR16503747 | 53,792,991 | 42,047,606 | 45,040,839 | 83.73 |
MNB32-3 | SRR16503746 | 53,760,318 | 43,236,118 | 43,159,101 | 80.28 |