Table 5 Screening of simple sequence repeats from the unigenes of the H. flava transcriptome
Summary of screened unigenes | Values |
|---|---|
Total number of sequences examined | 69,822 |
Total size of examined sequences (bp) | 55,278,029 |
Total number of identified SSRs | 3480 |
Number of SSR-containing sequences | 2166 |
Number of sequences containing > 1 SSR | 826 |
Number of SSRs present in compound formation | 439 |
Detailed analysis of repeats based on iterations | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Repeats | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ≥ 11 | Total |
Dinucleotide | 0 | 0 | 577 | 273 | 196 | 98 | 66 | 64 | 1274 |
Trinucleotide | 0 | 1095 | 486 | 209 | 89 | 3 | 6 | 19 | 1907 |
Tetranucleotide | 182 | 36 | 27 | 1 | 3 | 2 | 1 | 0 | 252 |
Pentanucleotide | 37 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 38 |
Hexanucleotide | 8 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 9 |
Total | 227 | 1133 | 1090 | 483 | 288 | 103 | 73 | 83 | 3480 |