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Table 4 Base polymorphism and haplotype diversity of Aedes aegypti and Ae. albopictus

From: Genetic diversity of Aedes aegypti and Aedes albopictus from cohabiting fields in Hainan Island and the Leizhou Peninsula, China

Mosquito

Population

N

(A + T) %

C

V

Pi

S

H

Hd

Ï€

k

Haplotypes

Ae. aegypti

YGH

30

69.6

1326

4

3

1

6

0.45977

0.00066

0.87126

Hap_2(22), Hap_12(3), Hap_15(2), Hap_19(1), Hap_20(1), Hap_21(1)

HT

31

69.5

1325

5

4

1

5

0.61290

0.00114

1.50968

Hap_2(18), Hap_8(7), Hap_10(1), Hap_14(4), Hap_23(1)

BS

18

69.5

1325

5

5

0

4

0.64706

0.00126

1.67320

Hap_2(10), Hap_13(4), Hap_17(3), Hap_18(1)

HW

28

69.5

1305

25

4

21

6

0.70899

0.00262

3.45767

Hap_2(3), Hap_8(8), Hap_9(13), Hap_10(2), Hap_11(1), Hap_16(1)

WS

33

69.5

1308

22

21

1

8

0.77083

0.00346

4.56818

Hap_1(7), Hap_2(11), Hap_3(1), Hap_4(10), Hap_5(1), Hap_6(1), Hap_7(1), Hap_22(1)

Total

140

69.5

1290

40

30

10

23

0.76495

0.00216

2.87338

 

Ae. albopictus

YGH

30

70.0

1317

13

5

8

14

0.88966

0.00163

2.15862

Hap_4(3), Hap_18(1), Hap_26(7), Hap_31(1), Hap_32(1), Hap_33(3), Hap_34(1), Hap_35(1), Hap_36(7), Hap_37(1), Hap_38(1), Hap_39(1), Hap_40(1), Hap_41(1)

HT

30

70.1

1320

10

5

5

9

0.78851

0.00111

1.47816

Hap_4(13), Hap_8(1), Hap_18(4), Hap_25(3), Hap_26(3), Hap_27(1), Hap_28(2), Hap_29(2), Hap_30(1)

BS

27

70.1

1322

8

5

3

8

0.76638

0.00137

1.81766

Hap_4(5), Hap_18(12), Hap_19(1), Hap_20(3), Hap_21(1), Hap_22(3), Hap_23(1), Hap_24(1)

HW

30

70.0

1312

18

7

11

15

0.83218

0.00181

2.40230

Hap_4(12), Hap_6(1), Hap_7(1), Hap_8(4), Hap_9(1), Hap_10(1), Hap_11(1), Hap_12(1), Hap_13(1), Hap_14(2), Hap_15(1), Hap_16(1), Hap_17(1), Hap_44(1), Hap_45(1)

WS

13

69.9

1319

11

7

4

8

0.85897

0.00262

3.48718

Hap_1(5), Hap_2(1), Hap_3(1), Hap_4(2), Hap_5(1), Hap_26(1), Hap_42(1), Hap_43(1)

Total

130

70.0

1294

36

22

14

45

0.89958

0.00176

2.34705

 
  1. C: Number of conserved sites; V: number of variable sites; Pi: number of parsimony information sites; S: number of singletons; H: number of haplotypes; Hd: haplotype diversity; π: nucleotide diversity; k: average number of nucleotide differences