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Molecular identification of zoonotic and livestock-specific Giardia-species in faecal samples of calves in Southern Germany



Giardia-infection in cattle is often subclinical or asymptomatic, but it can also cause diarrhoea. The livestock-specific species Giardia bovis is the most frequently observed in cattle, however, the two zoonotic species Giardia duodenalis and Giardia enterica have also been found. Therefore calves are thought to be of public health significance. The aim of this study was to obtain current data about the frequency of the different Giardia-species in calves in Southern Germany.


Faecal samples of calves (diarrhoeic and healthy) in Southern Germany, diagnosed Giardia-positive by microscopy, were characterised by multi-locus PCR and sequencing.

Of 152 microscopically Giardia-positive samples 110 (72.4%) were positive by PCR and successfully sequenced. G. bovis (Assemblage E) was detected in 101/110 (91.8%) PCR-positive samples, whilst G. duodenalis (Assemblage A) was detected in 8/110 (7.3%) samples and a mixed infection with G. duodenalis and G. bovis (Assemblage A+E) was identified in 1/110 (0.9%) samples. The sub-genotypes A1, E2 and E3 were identified with the β-giardin and the glutamate dehydrogenase genes. In the majority of diarrhoeic faecal samples a co-infection with Cryptosporidium spp. or Eimeria spp. was present, however, there were some in which G. bovis was the only protozoan pathogen found.


The results suggest that there is potentially a risk for animal handlers as calves in Southern Germany are, at a low percentage, infected with the zoonotic species G. duodenalis. In addition, it was found that G. bovis was the only pathogen identified in some samples of diarrhoeic calves, indicating that this parasite may be a contributing factor to diarrhoea in calves.



Worldwide the protozoan Giardia spp. is one of the most common intestinal parasites in humans (reviewed in [1, 2]) and also a frequent enteric parasite in animals including companion animals, livestock and wildlife [2]. According to Monis et al. [3] there are eleven species within the genus Giardia. Six of them, formally known as Assemblages A-G of the Giardia duodenalis morphological group, are genetically but not morphologically distinguishable. They can infect humans and mammals, with some being host specific and others having low host specificity.

Giardia- infection in cattle is often subclinical or asymptomatic, but this infection can also cause symptoms including acute or chronic diarrhoea, reduced weight gain and ill thrift in young calves [4, 5]. Although the prevalence of Giardia in cattle around the world varies considerably (reviewed in [5, 6]), longitudinal studies have shown cumulative infection rates in calves of 100% [7, 8]. The two zoonotic species G. duodenalis (Assemblage A) and G. enterica (Assemblage B) and the livestock-specific species G. bovis (Assemblage E) are able to infect cattle with G. bovis being found most frequently followed by G. duodenalis[913]. Therefore, calves are thought to be of public health significance both as a source of waterborne outbreaks of giardiasis in humans and as a risk to in-contact animal handlers [2, 14].

Current data on the occurrence of the different Giardia species in German calves is only available for 2–16 week-old calves from farms around Berlin. In that study (15) a commercially available monoclonal antibody-based ELISA was used and Giardia was detected in 100% of the farms and 51.2% of the animals sampled. Subsequent molecular characterisation ascertained G. bovis (Assemblage E) was the most common species present, but infections with G. duodenalis (Assemblage A) and mixed infections of G. duodenalis and G. bovis (Assemblage A+E) were also found [15].

Thus, the aim of this study was to obtain current data about the frequency of the different Giardia species in calves of a wider range of age in Southern Germany.



Faecal samples of calves from the southern federal states of Germany, Bavaria and Baden-Württemberg, were sent to the Diagnostic Laboratory of Comparative Tropical Medicine and Parasitology, LMU Munich, Germany for microscopy analysis. Giardia spp., Cryptosporidium spp. and Eimeria spp. were detected using the carbolfuchsin-stained direct faecal smear [16] and the merthiolate iodine formaldehyde concentration (MIFC) with the addition of Lugol’s solution [17]. Samples from 152 calves between 3 and 130 days of age (mean age: 50.7 days, n = 138) were diagnosed Giardia-positive by the MIFC-method between June 2011 and January 2013 and stored at −20°C. In February 2013 these samples were preserved in 70% ethanol and sent to the School of Veterinary and Life Sciences, Murdoch University, Australia, for molecular characterisation.

DNA extraction

DNA was extracted from faecal samples using the Maxwell® 16 Tissue DNA Purification Kit (Promega, Madison, USA) with the Maxwell® 16 Instrument (Promega). In addition to the recommended protocol, 1 μl of the final elution was further diluted by adding 4 μl of Water-ultra pure grade (Fisher Biotech Perth, Australia). Both neat and dilute templates were used in PCRs.

PCR amplification

For the amplification of the 18S rRNA gene and the β-giardin gene a nested PCR was carried out and for the amplification of the glutamate dehydrogenase (GDH) gene a semi-nested PCR was performed. Details of primers and cycling conditions are listed in Table 1.

Table 1 PCR conditions and primers

DNA sequencing

PCR products were purified using Agencourt AMPure XP magnetic beads (Beckman coulter, Beverly, USA) as per the manufacturer’s instructions. Sequence reactions were performed using the Big Dye Terminator Version 3.1 cycle sequencing kit (Applied Biosystems) according to the manufacturer’s instructions. PCR products were sequenced with the second round primers (1 μl [2.5 μM]). The cycling conditions for nucleotide sequencing are: 1 cycle of 96°C for 2 min and 25 cycles at 96°C for 10 s, 50°C for 5 s and 60°C for 4 min. Reactions were electrophoresed on an ABI 3730 48 capillary machine.

Species identification

Sequences were analysed using Sequencher 4.8 (Gene Codes, Ann Arbor, MI, USA) and compared to published sequences (Table 2) to identify species and sub-genotype information.

Table 2 GenBank accession numbers used for alignment with Giardia sequences


Of the 152 samples, diagnosed Giardia- positive by microscopy, 110 (72.4%) were positive by PCR and successfully sequenced.

Sequence analysis identified the presence of G. bovis (Assemblage E) in 101/110 (91.8%) PCR-positive samples, G. duodenalis (Assemblage A) in 8/110 (7.3%) samples and a mixed template of G. duodenalis and G. bovis (Assemblage A+E) in 1/110 (0.9%) samples. Using the β-giardin and GDH genes it was possible to identify sub-genotypes within the species G. bovis (E2 and E3) and G. duodenalis (A1) (Table 3).

Table 3 Genotypic characterisation of Giardia spp. isolates at different loci

Of the 110 PCR-positive samples 94 (85.5%) samples amplified at one locus, whereas 12/110 (10.9%) and 4/110 (3.6%) samples amplified at 2 and 3 loci, respectively. 18S amplified most frequently (106/152 samples, 69.7%), whereas β-giardin and GDH amplified comparatively rarely (16/152, 10.5%; 8/152, 5.3%) (Table 3).

Table 4 shows that in the majority of the calves with diarrhoea a co-infection with Cryptosporidium spp. or Eimeria spp. was present.

Table 4 Distribution of mono- and mixed infections of Giardia -positive calves in relation to faecal consistency


The results of this study reveal that the livestock-specific species G. bovis (Assemblage E) is the most frequent species (91.8%) in calves in Southern Germany. The zoonotic species G. duodenalis (Assemblage A) was found in a low number of samples (7.3%), while a mixed infection of G. duodenalis and G. bovis was identified in only one sample (0.9%). G. enterica (Assemblage B), the second zoonotic species, was not detected in this study.

Similarly in another study on German calves, the same species were detected and G. bovis was also found most frequently; however, there was a higher proportion of infection with G. duodenalis as well as with mixed infections than observed in this study [15].

Finding G. bovis in the majority of Giardia-infections in calves and G. duodenalis in only some cases also concurs with the results of former studies on cattle [1012, 2224]. In some studies G. bovis was the only species identified in calves [9, 25]. G. enterica was not detected in this study, which is in accordance with the results of many previous studies although several did find this genotype in cattle [10, 12, 13, 21]. One study diagnosed G. enterica more frequently than G. bovis[26] whereas studies in New Zealand found only infections with G. duodenalis and G. enterica, but not with G. bovis[2729].

The finding of sub-genotypes E2 and E3 within the species G. bovis (Assemblage E) is similar to former studies [11, 14, 21]. According to Xiao and Fayer [30] and Feng and Xiao [1] A1 and A2 are the most common sub-genotypes of G. duodenalis (Assemblage A), with humans being mostly infected with A2 and animals with A1. This agrees with former results [14, 22, 23] and with the results of this study, as A1 was the only sub-genotype of G. duodenalis diagnosed. However, others have found one or more of the sub-genotypes A1-A4 in cattle [1012, 21, 24]. Therefore it is possible that calves can be infected with a variety of sub-genotypes of G. duodenalis, all of which have also been identified in humans [21]. This suggests that there may be an interaction between the human and livestock transmission cycle [3]. Cattle have long been assumed to be of public health significance as a source of waterborne outbreaks of giardiasis in humans due to contamination of ground and surface water, although, there is no evidence incriminating infected cattle in any of the 132 documented waterborne outbreaks [2]. However, it has been shown, that animal handlers can be in danger of zoonotic transmission of G. duodenalis from infected cattle [14], and in reverse anthropozoonotic transmission of G. duodenalis from animal handlers to cattle is also possible [13]. Thus, transmission of the zoonotic species, which was detected in this study, could in principle be possible between animal handlers and cattle.

The role of Giardia as a cause of diarrhoea in calves is still unclear, as there are conflicting results from a number of studies, some demonstrating an association and others not. Furthermore, the presence of species-specific pathogenicity in calves poses further difficulties in the evaluation and has not been determined in another bovine study [11]. The role of the particular Giardia-species in mixed-infections in diarrhoeic calves could not be clarified either. However, the identification of some diarrhoeic samples, where G. bovis was the only pathogen detected, may suggest that this species does contribute to diarrhoea in calves. Whether these results are indicative or not remains unclear. Further studies will show whether differences in the clinical outcomes can occur due to the various sub-genotypes as has been established in human medicine [2].


The results of this study show that although the livestock specific species G. bovis has been diagnosed most frequently, the potential zoonotic species G. duodenalis is also present in calves in Southern Germany and thus might be a risk for animal handlers. Furthermore the results indicate that G. bovis might contribute to diarrhoea, as it was the only pathogen found in a proportion of the samples from diarrhoeic calves.


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We thank our colleagues in the lab, especially Elisabeth Kiess, Kathrin Simon and Tim Tiedemann for their contribution to the study.

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Correspondence to Julia Gillhuber.

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The authors declare that they have no competing interests.

Authors’ contributions

JG prepared the samples, analysed and interpreted the data and drafted the manuscript, AA and LP carried out the PCR and the sequence analysis, AT participated in the design and conception of the study and reviewed the draft, KP and MS conceived of the study, participated in its design and conception and helped to draft the manuscript. All authors read and approved the final manuscript.

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Gillhuber, J., Pallant, L., Ash, A. et al. Molecular identification of zoonotic and livestock-specific Giardia-species in faecal samples of calves in Southern Germany. Parasites Vectors 6, 346 (2013).

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  • PCR
  • Diarrhoea
  • Protozoan
  • Giardia assemblages
  • Cattle
  • Giardia duodenalis morphological group


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