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Evidence to support natural hybridization between Anopheles sinensis and Anopheles kleini (Diptera: Culicidae): possibly a significant mechanism for gene introgression in sympatric populations
Parasites & Vectors volume 7, Article number: 36 (2014)
Malaria caused by Plasmodium vivax is still a public health problem in the Republic of Korea (ROK), particularly regarding the recent re-emergence of this malarial species near the demilitarized zone in northwestern Paju City, Gyeonggi-do Province. Currently, at least 4 species (An. kleini, An. pullus, An. belenrae and An. lesteri) of the Hyrcanus Group are reported as possible natural vectors of vivax malaria in the ROK, and An. sinensis, which is the most dominant species, has long been incriminated as an important natural vector of this P. vivax. However, An. sinensis was ranked recently as a low potential vector. According to the discovery of natural hybrids between An. sinensis (a low potential vector for P. vivax) and An. kleini (a high potential vector for P. vivax) in Paju City, intensive investigation of this phenomenon is warranted under laboratory conditions.
Mosquitoes were collected during 2010-2012 from Paju City, ROK. Hybridization experiments used iso-female line colonies of these anophelines together with DNA analysis of ribosomal DNA [second internal transcribed spacer (ITS2)] and mitochondrial DNA [cytochrome c oxidase subunit I (COI)] of the parental colonies, F1-hybrids and repeated backcross progenies were performed intensively by using a PCR-based assay and pyrosequencing technology.
The results from hybridization experiments and molecular investigations revealed that the mitochondrial COI gene was introgressed from An. sinensis into An. kleini. The An. sinensis progenies obtained from consecutive repeated backcrosses in both directions, i.e., F2-11 progeny [(An. sinensis x An. kleini) x An. sinensis] and F3-5 progeny [(An. kleini x An. sinensis) x An. kleini] provided good supportive evidence.
This study revealed introgression of the mitochondrial COI gene between An. sinensis and An. kleini through consecutive repeated backcrosses under laboratory conditions. This new body of knowledge will be emphasized in reliable promising strategies in order to replace the population of An. kleini as a high potential vector for P. vivax, with that of a low potential vector, An. sinensis, through the mechanism of gene introgression in nature.
Up until now, at least 26 species members of the Anopheles hyrcanus group have been reported, and their distribution has extended widely from Europe to East and Southeast Asia, including some of the off-lying islands of the Indian and Pacific Oceans . Some species of the Hyrcanus Group are accepted as important vectors in transmitting human diseases, e.g., malaria (Plasmodium vivax) [2–14], filariae (Wuchereria bancrofti and Brugia malayi) [15, 16], and Japanese encephalitis virus [17, 18], particularly in the Oriental and contiguous parts of eastern Palaearctic regions.
At least 6 species (Anopheles sinensis, An. lesteri, An. pullus, An. sineroides, An. belenrae and An. kleini) of the Hyrcanus Group are found indigenously in the Republic of Korea (ROK). Among these, An. sinensis has long been incriminated as the most dominant and important natural vector of P. vivax, especially due to the recent re-emergence of vivax malaria near the demilitarized zone in northwestern Paju City, Gyeonggi-do Province [3, 19–22]. However, the low concentration of circumsporozoite (CS) antigen obtained from wild-caught females , and very low sporozoite rates recovered from laboratory susceptibility tests [7, 9], have brought about the cryptic status of An. sinensis as a natural vector of vivax malaria transmission in the ROK. Consequently, the implication of other An. hyrcanus species, i.e., An. kleini, An. pullus, An. belenrae and An. lesteri as possible natural vectors of vivax malaria in the ROK has been proposed extensively [8, 9], even though the latter species is thought to have a small population . Remarkably, An. sinensis strain from China has been incriminated recently as an efficient vector of P. vivax.
The discovery of natural hybrids has been reported from some important malaria vectors, for instance, between An. gambiae and An. arabiensis, An. scanloni (= dirus C) and An. baimaii (= dirus D) , and An. minimus and An. harrisoni[25, 26]. Regarding An. kleini (a high potential vector for P. vivax) and An. sinensis (a low potential vector for P. vivax) [7, 9], a single gravid, natural hybrid female was discovered between these 2 anopheline species from a total of 658 wild-caught females in Paju City, ROK; an endemic zone of vivax malaria from 2004 to 2008. These wild-caught females comprised 360 An. sinensis, 258 An. pullus, 20 An. belenrae, 15 An. kleini, 3 An. sineroides, 1 An. lesteri and 1 hybrid female between An. kleini and An. sinensis. The results of self-crossing between F1-progenies derived from one egg-batch of an egg-laid gravid female, and molecular investigations, revealed possible natural backcrossing (introgression) between a hybrid female and male An. sinensis. There is no clear basic information on the introgression between An. sinensis and An. kleini, as proposed by . Thus, systematic investigations into the role of introgressive hybridization between these two anopheline species were performed in this study. Accordingly, attempts were made to establish iso-female line colonies of An. sinensis and An. kleini, perform crossing experiments (reciprocal and back crosses), investigations of reproductive systems of hybrid and backcross progenies, and compare DNA analysis of ribosomal DNA (ITS2) and mitochondrial DNA (COI) of the parental, F1-hybrids with that of repeated backcross progenies by using a PCR-based assay and pyrosequencing technology.
Establishment of iso-female lines
Mosquitoes were collected during 2010-2012 from Paju City, Republic of Korea (ROK), by placing a light trap in cowsheds. Then, wild-caught females were transported for colonization to the insectary of the Department of Parasitology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand. Four iso-female lines of both An. sinensis and An. kleini were established successfully using the methods of . An F1-progeny of each iso-female line was used for species identification following the keys of  as well as a molecular assay . Then, one iso-female line of each species, with molecular identification of both nuclear (ITS2) and mitochondrial (COI) genes, were well matched with those in the GenBank nucleotide sequence database, and selected, i.e., An. sinensis F0-1 (SF0-1) and An. kleini F0-1 (KF0-1). These iso-female lines have been maintained in colonies in the laboratory at Chiang Mai University for more than 10 consecutive generations, and used for hybridization experiments and comparative DNA sequence analyses.
Hybridization experiments (reciprocal and back crosses, and repeated backcross progenies) between An. sinensis and An. kleini were performed by using virgin females and males and following the techniques previously reported by . Post-mating reproductive isolation was recorded using the criteria of low viability (hatchability, survival, pupation, and emergence), adult sex distortion and abnormal morphology of the reproductive system.
PCR identification, dideoxy sequencing and phylogenetic analysis
DNA was extracted individually from 60 mosquitoes using the RED Extract-N-Amp™ Tissue PCR kit (Sigma-Aldrich, Spruce Street, SL) as shown in Table 1. Primers for the amplification of ITS2 and COI regions followed a previous report by . The ITS2 region of the rDNA was amplified using the ITS2 Forward and ANO 28S-20 primers [30, 32]. The mitochondrial COI gene was amplified using the LCO1490 (5′-GGT CAA CAA ATC ATA AAG ATA TTG G-3′) and HCO2198 (5′-TAA ACT TCA GGG TGA CCA AAA AAT CA-3′) primers of . PCR reaction was carried out in a total volume of 25 μl containing 10 pM of each primer; and 2.5 μl of 10X buffer containing 50 mM KCl, 10 mM Tris-HCI, 0.1% Triton®X 100 supplemented with 1.5 mM MgCl2 (Promega, USA), 200 μM of each dNTP (GeneCraft, Germany), 0.5 μl of Taq DNA polymerase (Promega, USA) and 10-100 pg of genomic DNA. The amplification profile comprised initial denaturation at 94°C for 3 min, with 30 cycles at 94°C for 30 sec, 55°C for 30 sec, and 72°C for 2 min, and a final extension at 72°C for 7 min. The PCR products were separated by electrophoresis on a 1.5% agarose gel stained with ethidium bromide. Finally, the purified PCR products were subjected to sequencing in an ABI PRISM 3700 DNA Analyzer (Applied Biosystems, Foster City, CA) using a Dye Terminator Cycle Sequencing Ready Reaction Kit (Applied Biosystems). The sequence data obtained were deposited in the GenBank nucleotide sequence database (Table 1). The newly determined ITS2 and COI sequences were also compared with those available in GenBank, using the Basic Local Alignment Search Tool (BLAST) available at http://blast.ncbi.nlm.nih.gov/Blast.cgi. The DNA sequence data were edited manually in BioEdit version 22.214.171.124  and aligned using CLUSTAL W . Constructions of neighbor-joining trees using distance , and the bootstrap test with 1,000 replications, were performed with the MEGA version 4.0 program based on COI sequences . The COI sequences of An. peditaeniatus (GenBank accession number AB539069)  and An. pullus (GenBank accession number AB444348)  were included in phylogenetic analysis.
PCR and pyrosequencing for the detection of An. sinensis and An. kleini sequences
DNA was extracted from each adult female mosquito of An. sinensis and An. kleini using a NucleoSpin tissue kit (Macherey-Nagel GmbH and Co., Duren, Germany). The procedure for the pyrosequencing assay followed that previously described by . The forward primer (Anop_COI_F: 5′-GAG CCC CTG ATA TAG CTT TTC CT-3′), and biotinylated reverse primers (Anop_COI_Rb: 5′- Biotin-CCA GAT GAA AGT GGG GGA TAA -3′), were designed to amplify a 142-bp fragment of COI, and a primer Anop_COI_S (5′-ATA AGT TTT TGA ATA TTA CC -3′) for pyrosequencing. Positive-control plasmids of each species were constructed by amplification of the 142-bp PCR products using Anop_COI_F and Anop_COI_R primers. They were ligated and transformed into a pGEM®-T Easy vector (Promega, WI) and an Escherichia coli JM109, respectively. The recombinant plasmids were sequenced bidirectionally in order to confirm the correction of data. The 142 bp was amplified from genomic DNA using the Anop_COI_F and Anop_COI_Rb primers. The reactions of PCR amplification were performed in a total volume of 25 μl containing 1X PCR buffer (Invitrogen, Carlsbad, CA) with 0.2 mM of each dNTP, 2 mM MgSO4, 0.4 μM of each primer, 0.625 U of Platinum Taq DNA polymerase high fidelity (Invitrogen, Carlsbad, CA) and 2 μl of the DNA sample. The PCR assay was conducted using a GeneAmp PCR system 9700 thermal cycler (Applied Biosystems, Singapore). The thermocycling program included: initial denaturation at 94°C for 5 min, with 40 cycles at 94°C for 30 sec, 57°C for 30 sec, and 72°C for 30 sec, and a final extension at 72°C for 7 min. PCR amplicons were detected by electrophoresis on 1.5% agarose gels. For pyrosequencing assays, 20 μl of the biotinylated PCR product of each sample was immobilized in the binding buffer with Streptavidin Sepharose™ beads (GE Healthcare BioSciences AB, Uppsala, Sweden). The beads together with the DNA were aspirated to a 96 format filter tool and passed through 70% ethanol and 0.2 M NaOH, and then washed with 10 mM Tris-acetate (pH 7.6) using a PyroMark™ Vacuum Prep Workstation (Biotage, Uppsala, Sweden). The beads were released subsequently into a PSQ™ 96 plate low (Biotage) containing 0.4 μM Anop_COI _S sequencing primer in the annealing buffer. The samples were heated to 80°C for 2 min before performing pyrosequencing reactions using PyroMark™ Gold Q96 SQA reagents and subjecting them to the PyroMark™ Q96 ID instrument (Biotage). Positive and negative controls were included in each pyrosequencing assay. Finally, the PyroMark™ Q96 ID software version 1.0 was used to analyze the results and generate a pyrogram.
The hatchability, pupation, emergence and adult sex-ratio of parental, reciprocal and back crosses, repeated backcrosses and hybrid crosses between An. sinensis and An. kleini were 88.06-92.57%, 77.96-92.97%, 94.10-96.98% and 0.81-0.89; 82.94-85.07%, 98.00-100%, 98.87-100% and 1.04-1.38; 61.10-69.01%, 100%, 97.10-100% and 1.13-1.43; 66.00-86.61%, 87.87-100%, 90.07-100% and 0.96-1.38, and 95.14%, 91.05%, 84.91% and 0.94; respectively (Table 2). All crosses yielded viable progenies, with no evidence of genetic incompatibility being observed among them, except for only sterile F1-progeny males of which the atrophy of testes and accessory glands were recovered from the reciprocal crosses in both directions (An. sinensis × An. kleini and An. kleini x An. sinensis) (Figure 1A), while normal development occurred in all males from repeated backcrosses (Figure 1B). On the other hand, all females from F1-hybrids and repeated backcrosses yielded normal development of ovarian follicles (Figures 1C and D). Regarding repeated backcross groups, the experiments of (An. sinensis x An. kleini) × An. sinensis were carried out from F1-10, whereas those of (An. kleini × An. sinensis) × An. kleini were investigated from F1-5. The reason for this was that the repeated backcross of (An. kleini × An. sinensis) × An. kleini could be carried out in only the fifth generation, which led to a lack of hybrids for further experimentation (repeated twice). Regarding hybrid crosses, the experiment was performed only on the F11 of [(An. sinensis × An. kleini) × An. sinensis] × [(An. sinensis × An. kleini) × An. sinensis].
PCR species identification
For molecular identification, sequences of nuclear ITS2 and mitochondrial COI genes were determined for both the parent mosquitoes and their hybrid progenies. Sequences of An. sinensis parents (F0) were well matched in both genes with those in the GenBank nucleotide sequence database. The four specimens of an An. kleini parent (F0) were also checked, and they all matched An. kleini based on ITS2 sequences. However, their COI gene, An. kleini matched in both species, with 1 being An. kleini and 3 An. sinensis (Table 1).
The F1-hybrid progenies have mixed sequences in their nuclear ITS2 gene. They have heterogeneous ITS2 sequences because they receive ribosomal RNA genes, including ITS2 from both parents. As for a maternal, mitochondrial COI gene, the hybrids followed the trait of the mother. All the progenies of An. sinensis × An. kleini matched An. sinensis based on COI sequences. However, progenies of An. kleini × An. sinensis matched both An. kleini and An. sinensis based on COI sequences, in which two progenies matched An. sinensis and one An. kleini (Table 1).
Two backcrossing groups were checked, with one being a progeny of (An. sinensis × An. kleini) × An. sinensis and the other a progeny of (An. kleini × An. sinensis) × An. kleini. In the (An. sinensis × An. kleini) × An. sinensis back crossing group, all the progenies were well matched An. sinensis NCBI sequences in the ITS2 sequence, except for 3 of F2-hybrid progenies (mixed). Also, all sequences of the COI gene showed An. sinensis. In the (An. kleini × An. sinensis) × An. kleini backcrossing group, all sequences of the ITS2 showed An. kleini, but sequences of the COI gene matched An. kleini only in 3 of F2-hybrid progenies, and the remaining F3-5 progenies matched An. sinensis (Table 1).
The neighbor-joining (NJ) tree was constructed based on COI sequences in order to determine sequence divergence among the species examined (Table 1, Figure 2). The NJ tree showed concordant results with the PCR assay in all samples, which were divided into two major clades with 67-74% bootstrap support. Clade I consisted of 55 samples of An. sinensis. It is interesting to note that among the 55 samples, 12 (KF0-2, KF0-3, KF0-4, KSKF3-1, KSKF3-2, KSKF3-3, KSKF4-1, KSKF4-2, KSKF4-3, KSKF5-1, KSKF5-2 and KSKF5-3) and 8 (SKF1-1, SKF1-2, SKF1-3, KSF1-1, KSF1-3, SKSF2-1, SKSF2-2 and SKSF2-3), were identified as An. kleini and mixed sequences of both species, respectively, based on ITS2 sequences. Furthermore, these samples were placed within the same clade as the published sequence of An. sinensis (mean genetic distances = 0.003). Clade II comprised 5 samples of An. kleini derived from parental (KF0-1), reciprocal (KSF1-2) and backcrosses (KSKF2-1, KSKF2-2 and KSKF2-3) based on COI sequences (Table 1). The mean genetic distance between these two species was 0.023.
The 24-nucleotide target region of the COI gene, including positions 237-260 of An. sinensis and An. kleini, was useful in classifying the sequenced species into 2 groups, as shown in Table 3 and Figures 3 and 4. The first group consisted of Parental: An. sinensis F0 (Figure 4A), F1: An. sinensis x An. kleini -- > hybrid F1 (Figure 4B), F5: hybrid F4 x An. sinensis -- > hybrid F5 (Figure 4C), F10: hybrid F9 x An. sinensis -- > hybrid F10 (Figure 4D), and F1: An. kleini x An. sinensis -- > hybrid F1 (Figure 4F) and another group comprised Parental: An. kleini F0 (Figure 4E) and F5: hybrid F4 x An. kleini -- > hybrid F5 (Figure 4G). Both groups differed from each other in three nucleotide positions (T237C, A243G and C253T) (Table 3). The positive-control plasmids showed similar results to the seven samples in the pyrogram, whereas, a negative control did not provide the pyrogram result.
Introgression or introgressive hybridization is the movement of a gene (gene flow) between species through hybridization by repeated backcrossing of an interspecific hybrid with one of its parent species. It can have important effects on dynamics of the hybrid zone, speciation and adaptive radiation . The variation of mitochondrial DNA is important and used widely for indirect studies of gene flow . Thelwell et al.  reported evidence of mitochondrial (ND5) introgression between An. bwambae and An. gambiae. Consequently, extensive investigations of introgression between An. gambiae and An. arabiensis, and An. bwambae and An. gambiae have been documented systematically and extensively during the past decade [44–46]. Additionally, Walton et al.  demonstrated that mitochondrial DNA introgressed from An. baimaii (= dirus D) into An. dirus (= dirus A), and Morgan et al.  reported evidence to support the mitochondrial introgression between An. baimaii and An. dirus by the high levels of bidirectional mitochondrial gene flow detected between these 2 species. A large number of anopheline species were reported to be capable of interspecific hybridizations under laboratory conditions . However, few species have succeeded in natural hybridization, for example, between An. gambiae and An. arabiensis, An. bwambae and An. gambiae, An. scanloni (= dirus C) and An. baimaii (= dirus D) , and An. minimus and An. harrisoni[28, 29]. Recent discovery of the natural hybrid between An. sinensis and An. kleini, and successful establishment of iso-female line colonies of these 2 anopheline species has urged this study to form a reliable systematic procedure to confirm this natural event and/or perform an introgressive study. The results of sterile F1-hybrid adult males with atrophy of accessory glands and testes obtained from the reciprocal crosses between these 2 anopheline species are in keeping with “Haldane Rule”, which states that in interspecific crosses, the heterogametic sex (X, Y) will show sterility or viability problems before the homogametic sex . Thus, the results of this study agree with those of Davidson , who reported that female and male hybrids obtained from An. gambiae and An. arabiensis were fertile and sterile, respectively. Furthermore, the results of this study are in accordance with crossing studies in the laboratory by Baimai et al. . They demonstrated that F1 hybrids obtained from the cross of female An. dirus with male An. scanloni were fertile and viable, with an exception of sterile males. It was interesting to note that the repeated backcross progenies in both directions, which resulted in obtaining An. sinensis from hybrids of F2-11 progenies [(An. sinensis x An. kleini) x An. sinensis] and F3-5 progenies [(An. kleini x An. sinensis) x An. kleini], indicated the presence of introgressive hybridization between An. sinensis and An. kleini.
Regarding PCR identification of parental specimens, the exact species of An. sinensis and An. kleini were used in this study based on both the nuclear ITS2 and mitochondrial COI genes. Interestingly, 4 iso-female lines of An. kleini showed the correct gene trait in the ITS2, but their COI sequences matched both species (i.e., An. kleini: 1 iso-female line, and An. sinensis: 3 iso-female lines). Therefore, the authors assumed that the COI sequences of An. kleini had been replaced by those of An. sinensis. Subsequently, reciprocal and repeated backcrosses were performed to clarify our hypothesis. Most COI sequence results of the progenies obtained from reciprocal and repeated backcrosses revealed that the mitochondrial COI gene introgressed from An. sinensis into An. kleini. This event resulted from introgression that occurred between these two species via consecutive repeated backcrosses. Thus, the sample identification of these 2 wild-caught species should be careful only when the COI barcoding region has been applied. Also, results from phylogenetic analysis confirmed the existence of an introgression phenomenon between them. Furthermore, the results from this study are in agreement with those of Petit and Excoffier . They suggested that in species with male-biased dispersal (heterogametic sex), mtDNA markers should introgress more readily than nuclear ones.
Pyrosequencing is a unique sequencing method that was developed as an alternative to classical DNA sequencing for short- to medium-read applications. It is an accurate, simple and flexible bioluminometric method, which does not need labeled nucleotides or gel electrophoresis . To date, this technology has been used successfully for high throughput identification of bacteria [54, 55], virus [56, 57], protozoan parasites [53, 58–60] and helminthes . This study applied the pyrosequencing technology for reliable identification from seven samples of An. sinensis and An. kleini. The results were consistent with those of dideoxy sequencing and phylogentic analysis in six samples, except for the one (sample code no. A7) matched with An. kleini COI sequences. This sample possibly had a different mitochondrial haplotype from other hybrid progenies. More recently, the next-generation sequencing provided a good explanation of interspecific gene flow between An. gambiae and An. arabiensis and An. gambiae M and S [62, 63].
The effectiveness of a vector control strategy, and genetically modified strains of mosquitoes in a population that is unable to transmit malarial parasites, relies upon the gene flow within species and introgression . Remarkably, Rheindt and Edwards  mentioned concern that in the long-term introgression with newcomer species may lead to a loss of genetic integrity in native species. Detection of natural hybridization is rare but meaningful in terms of horizontal transfer of advantageous genes, such as those in malaria susceptibility, particularly when species that allow hybridization are susceptible or refractory to malarial parasites [9, 66, 67]. This event is also involved in insecticide resistant genes, e.g., the kdr gene [68, 69] and ace-1 gene . In addition, Morgan et al.  stated that the absence or presence of gene flow between populations and species has an impact on the dynamics of malaria transmission as well as construction of effective strategies for controlling malaria vectors. Our studies presented the introgressive events through consecutive repeated backcrosses under laboratory conditions, in which the mtDNA gene could be moved from one species to another. However, natural movement of the refractory gene to vivax malaria between sympatric populations of a low potential vector (An. sinensis) and a high potential vector (An. kleini) needed intensive and systematic clarification. This new body of knowledge is anticipated to elucidate the promising strategies for replacing populations of high potential vectors with that of low potential vectors by using genetic manipulation through the gene introgression mechanism.
A single gravid, natural hybrid female between high (An. kleini) and low (An. sinensis) potential vectors of P. vivax was discovered in Paju City, Republic of Korea (ROK). The discovery of natural hybrids between these two anopheline species has led to systematic investigations of various aspects that clarify this event. Hybridization experiments used iso-female line colonies of these anophelines together with DNA analysis of ribosomal DNA [second internal transcribed spacer (ITS2)] and mitochondrial DNA [cytochrome c oxidase subunit I (COI)] of the parental colonies, F1-hybrids and repeated backcross progenies were performed intensively by using a PCR-based assay and pyrosequencing technology. The results revealed that introgression of the COI gene between An. sinensis and An. kleini was involved in this phenomenon. The pure An. sinensis obtained from hybrids of repeated backcross progenies in both directions, i.e., F2-11 progeny [(An. sinensis x An. kleini) x An. sinensis] and F3- 5 progeny [(An. kleini x An. sinensis) x An. kleini] provided obvious supportive evidence. The results emphasize a promising way to replace the population of a high potential vector (An. kleini) with that of a low potential vector (An. sinensis) through the mechanism of gene introgression.
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This work was supported financially by the National Research Council of Thailand (NRCT-NRF: NRF 1/2010 and NRF 1/2012) and Faculty of Medicine Research Fund, Chiang Mai University awarded to WC and AS, and the National Research Foundation of Korea (NRF) Grant (NRF-2010-C00033) awarded to GSM.
The authors declare that they have no competing interests.
All the authors contributed significantly to this study. WC and GSM designed the experiments, carried out field and laboratory experiments, interpreted the results, and wrote the manuscript. AS participated in hybridization experiments and molecular identifications. PMI, CT and VL carried out pyrosequencing analysis. All the authors read and approved the final version of the manuscript.
Wej Choochote, Gi-Sik Min contributed equally to this work.
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Choochote, W., Min, G., Intapan, P.M. et al. Evidence to support natural hybridization between Anopheles sinensis and Anopheles kleini (Diptera: Culicidae): possibly a significant mechanism for gene introgression in sympatric populations. Parasites Vectors 7, 36 (2014). https://doi.org/10.1186/1756-3305-7-36
- Anopheles sinensis
- An. kleini
- Hybridization experiment
- Second internal transcribed spacer
- Cytochrome c oxidase subunit I