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Occurrence and multilocus genotyping of Giardia intestinalis assemblage C and D in farmed raccoon dogs, Nyctereutes procyonoides, in China



Giardia intestinalis, the only causative agent of human giardiasis, can infect a wide range of animals. As no information concerning the prevalence and genotyping of G. intestinalis in raccoon dogs in China is available, examination of 305 faecal samples from raccoon dogs in Jilin Province (n = 110), Heilongjiang Province (n = 40), Liaoning Province (n = 72), Hebei Province (n = 54) and Shandong Province (n = 29) was conducted to estimate the prevalence of G. intestinalis in raccoon dogs in northern China and identify their genotypes using a genetic approach.


Of 305 faecal samples from farmed raccoon dogs, 22 (7.21 %) were detected G. intestinalis-positive by nested PCR amplification of the triosephosphate isomerase (tpi) gene. The prevalence of G. intestinalis was strongly related to the region and season of sampling. All 22 samples were analysed at the tpi, the glutamate dehydrogenase (gdh) and the beta giardin (bg) gene loci, showing 13, 3, 2 subtypes, respectively. The results also demonstrated that two raccoon dogs harboured mixed infections of assemblage C and assemblage D (or mixed C/D), whereas only assemblage C was detected in the remaining 20 samples. Moreover, five new multilocus genotypes, named as MLGs C1-C5, were observed in the assemblage C in the present study.


This is the first report of G. intestinalis infection in raccoon dogs in China. DNA sequence analysis of the tpi, gdh and bg gene indicated that 13, 3, 2 subtypes were found at these loci, respectively. Furthermore, this is also the first report of five new multilocus genotypes (MLGs C1-C5) in farmed raccoon dogs, which provides baseline data for further studies of the distribution of G. duodenalis in different hosts.


Giardia, comprised of six known species, is a protozoan genus with veterinary and public health importance [14]. Among these Giardia spp., Giardia intestinalis, a cosmopolitan zoonotic parasite, is the only causative agent of human giardiasis [4, 5]. Hosts acquire giardiasis mainly through faecal-oral route, and show symptom of diarrhoea [6, 7]. Approximately 280 million people are diagnosed Giardia-infected per year worldwide [3, 8]. Moreover, large numbers of organisms have also been reported as hosts of G. intestinalis, including raccoon dogs [9].

Eight genotypes or assemblages (A to H) of G. intestinalis have recently been described worldwide [2, 10, 11]. Assemblages A and B are responsible for most of human infections and also infect a wide range of non-human hosts [3, 12] and assemblages C–H seem to be animal-specific [3, 13, 14]. Generally, assemblages C and D were commonly found in dogs, but were occasionally identified in humans [2, 3, 13, 14].

China has rich diversity of animals, but limited information is available concerning the prevalence and genotypes of G. intestinalis. More importantly, no information is available for farmed raccoon dogs (Nyctereutes procyonoides) in China. The raccoon dog is an animal of economic importance for humans related to fur trading. In general, with the exception of raccoon dogs aged of less than 45 days (pre-weaned), raccoon dogs often feed in individual cages, consuming chicken’s intestines or fodder. The objectives of the present study were to reveal whether farmed raccoon dogs are infected with G. intestinalis in China, and to improve the information on the distribution of G. intestinalis assemblages in China.


Study population

The study population comprised of 305 raccoon dogs collected from 5 provinces in northern China, where nearly 25,100,000 raccoon dogs represented the breeding stock in 2015. According to the fact that prevalence of Giardia in dogs was 4.5 % in 2013–2014 [15], the expected prevalence is 4.5 % (P) with an accepted deviation of the true prevalence of 5 (d) and a confidence level of 95 % (z = 1.96). The sample size was calculated as 66 [according to n = P (1 − P)z 2/d 2].

Specimen collection

A total of 305 faecal samples were randomly collected from farmed raccoon dogs in Jilin Province (n = 10), Liaoning Province (n = 72), Heilongjiang Province (n = 40), Hebei Province (n = 54), and Shandong Province (n = 29) in northern China in 2015. Samples were collected three times per year by seasons (three seasons from spring to autumn were defined as January-March, April-June, and July-September, respectively) from each of the eight farms, but probably not exactly from the same animals. Each of the samples was collected into a sterile disposal latex glove immediately after its defecation onto the bolster plates, and then transported to the laboratory. Information concerning region, season, gender and age were acquired.

DNA extraction and PCR amplification

Genomic DNA was extracted from each of fecal samples using the Stool DNA kit (OMEGA, Norcross, Georgia, USA) according to the manufacturer’s instructions and stored at -20 °C until PCR test. Moreover, distilled water controls were included in each test to prevent/minimize cross-contamination at the DNA isolation or PCR phase. G. intestinalis prevalence and species/assemblages were detected by nested PCR amplification of approximately 530 bp fragment of the triosephosphate isomerase (tpi) gene. Furthermore, tpi-positive specimens were also analysed by PCR amplification of the glutamate dehydrogenase (gdh) and the beta giardin (bg) gene. The PCR amplification primers and their annealing temperatures for the three genes are listed in Table 1. Positive and negative controls were included in each test. Amplification products were observed under UV light after electrophoresis in 1.5 % agarose gel containing GoldView™ (Solarbio, Beijing, China).

Table 1 Primers used in the study, annealing temperatures used in the PCRs and expected sizes of the PCR products

Sequence and phylogenetic analyses

Positive secondary PCR products were sequenced by Sangon Biotech Company (Shanghai, China). All products were sequenced bidirectionally to confirm the accuracy of sequence. Meanwhile, genotypes that produced sequences with mutations, including single nucleotide substitutions, deletions or insertions, were confirmed by DNA sequencing of at least two PCR products. Assemblages and subtypes were identified by alignment of the nucleotide sequences with known reference tpi, gdh and bg gene sequences of G. intestinalis available in the GenBank database using BLAST ( and computer program Clustal X 1.83.

Statistical analyses

The variation in G. intestinalis prevalence (у) of farmed raccoon dogs in relation to region, age, gender and season were analysed by χ 2 test using SAS version 9.1 (SAS Institute Inc., USA). Results were considered statistically significant at P < 0.05. Odds ratios (ORs) and their 95 % confidence intervals (95 % CIs) were also calculated.

Results and discussion

Of 305 raccoon dogs, 7.21 % (22/305) were tested G. intestinalis-positive in the present study, with 6.00 % in females and 8.39 % in males (Table 2). Statistically significant differences were found between autumn (3.51 %), spring (4.17 %) and summer (13.64 %) (χ 2 = 10.62, df = 2, P = 0.0049) (Table 2). Raccoon dogs aged over 3 months (7.11 %) had similar prevalence than those of less than 3 months of age (7.50 %) (Table 2). Moreover, G. intestinalis prevalence in raccoon dogs of different region groups varied from 0 % to 15.28 %; the difference was statistically significant (χ 2 = 11.69, df = 4, P = 0.0198) (Table 2). Prevalence in different farm groups ranged from 0 % to 16.67 % (Table 3). In the present study, the overall prevalence of G. intestinalis in farmed raccoon dogs was 7.21 % (22/305, 95 % CI: 4.31–10.12), a value much higher than that found in foxes in Croatia (4.5 %) [16] and Norway (4.8 %) [17]. The prevalence is also higher than that reported in a range of other animals in northern China, such as 3.63 % in dairy cattle in northwest China [3], 6.0 % in yaks in the central western region of China [18], 0.6 % in non-human primates in Henan Province [19], 5.0 % in sheep and goats in Heilongjiang Province [20], but slightly lower than that in golden takins (8.9 %) in Shannxi Province [21], police and farm dogs (13.2 %) in Shenyang, Liaoning Province [22] and rabbits (7.41 %) in Heilongjiang Province [23]. The difference may be related to many factors, such as different timing of specimen collection, different susceptibility to this disease, sample sizes, as well as different detection methods and climate at the sampling locations, so the real reason regarding this difference is difficult to explain.

Table 2 Prevalence of Giardia intestinalis in raccoon dogs in Jilin, Liaoning, Heilongjiang, Shandong and Hebei Provinces, northern China
Table 3 Distribution of Giardia intestinalis genotypes in different farms

Faecal-oral route is the most important way of G. intestinalis transmission [6]. Therefore, higher raccoon dog density in Liaoning Province is one of the most important reasons why raccoon dogs from Liaoning have a higher G. intestinalis prevalence than those from other provinces (P = 0.0198) (Table 2). A previous study suggested that higher precipitation can create more opportunities for G. intestinalis transmission [3]. This is supported by the higher G. intestinalis prevalence detected in summer and spring in the present study (Table 2).

A total of five G. intestinalis assemblages, namely assemblages A, B, C, D and E, have been found in canids worldwide [2426], and in some cases these were detected as mixed infections. In order to estimate the real state of G. intestinalis infections and determine whether mixed infections exist in the raccoon dogs examined here, we applied multilocus genotyping (tpi, gdh and bg loci). However, probably due to the smaller sample size, only assemblages C and D were found based on three loci and 22 tpi, 13 bg and 11 gdh gene sequences were acquired. These results suggest that the raccoon dog population studied exhibits a lower risk for transmission of zoonotic G. intestinalis to humans in the investigation sites. The fact that only two raccoon dogs were identified with mixed infections (assemblages C and D) whereas the remaining samples were infected only with assemblage C further confirm that C and D are the most prevalent G. intestinalis assemblages in canids.

In this study, all 22 isolates of G. intestinalis were characterized at the gdh, tpi and bg gene loci, and high genetic polymorphism of G. intestinalis was observed at the three loci (Table 4). Among 13 tpi subtypes, with the exception of the sub-assemblage C4 (accession no. KX014798) previously reported from a pig in China (accession no. KJ668133), each of the remaining 12 sub-assemblage sequences (C1–C3 and C5–C13) had 99 % similarity with the reference sequence of assemblage C, which have not been recorded previously. Moreover, six and ten SNPs were observed at gdh and bg loci, respectively. At gdh locus, three sub-assemblages (C1–C3) were detected, with two known sub-assemblages (C1 and C3) and one novel sub-assemblage (C3). Two (C1, KX014790 and C2, KX014791) of them were identical to the known sequences of assemblage C: accession no. JN587353 (from dog in Croatia [27]) and accession no. KF993732 (from Husky dog in China [28]). Assemblage C3 (accession no. KX014792) has not been reported previously, and the sequence showed 99 % similarity with the reference sequence (accession no. KF993732, from dog in China [28]). Furthermore, two assemblages (C and D) were identified at bg locus, with one sub-assemblage C1 and one sub-assemblage D1. The two sub-assemblages, C1 (KX014788) and D1 (KX014789), were reported in Canis lupus familiaris in Belgium previously [29]; our sequences exhibited 100 % similarity with the reference sequences of assemblage C (accession no. HM061150, from Canis lupus familiaris in Belgium [29]), and assemblage D (accession no. HM061152, from Canis lupus familiaris in Belgium [29]), respectively. Six G. intestinalis isolates were successfully sequenced at all three loci, forming five new multilocus genotypes (MLGs) in assemblage C, namely MLGs C1–C5 (Table 5). All five different assemblage C MLGs were identified for the first time, which may be due to the differences in species susceptibility and geographical locations. These findings can provide baseline data for further studies of the analyzation of G. duodenalis assemblage MLGs. These results also indicate high genetic diversity of G. intestinalis assemblage C in raccoon dogs in China, which agree with previous reports showing that the same G. intestinalis assemblage isolates may be divided into different MLGs [3, 21].

Table 4 Variations in the tpi, gdh and bg nucleotide sequences among the genotypes of the Giardia intestinalis in raccoon dogs in Northern China
Table 5 Multilocus characterisation of Giardia intestinalis assemblage C isolates from raccoon dogs at tpi, gdh and bg loci


The present study demonstrated the existence (7.21 %, 22/305) of G. intestinalis in farmed raccoon dogs in China. This study also found G. intestinalis assemblages C and D in farmed raccoon dogs by MLG model for the first time, with 13, three and one genotypes of sub-assemblage C at the tpi gdh and bg loci, respectively. Moreover, five new MLGs (MLGs C1–C5) were found in the present study. These findings have implications for further studies of the distribution of G. intestinalis in different hosts.


bg :

Beta giardin gene


Confidence interval

gdh :

Glutamate dehydrogenase gene


Multilocus genotype


Odds ratio

tpi :

Triosephosphate isomerase (tpi) gene


  1. 1.

    Minetti C, Lamden K, Durband C, Cheesbrough J, Fox A, Wastling JM. Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England. Parasit Vectors. 2015;8:444.

    Article  PubMed  PubMed Central  Google Scholar 

  2. 2.

    Feng Y, Xiao L. Zoonotic potential and molecular epidemiology of Giardia species and giardiasis. Clin Microbiol Rev. 2011;24:110–40.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  3. 3.

    Zhang XX, Tan QD, Zhao GH, Ma JG, Zheng WB, Ni XT, et al. Prevalence, risk factors and multilocus genotyping of Giardia intestinalis in dairy cattle, Northwest China. J Eukaryot Microbiol. 2016;63:498–504.

    Article  PubMed  Google Scholar 

  4. 4.

    Qi M, Xi J, Li J, Wang H, Ning C, Zhang L. Prevalence of zoonotic Giardia duodenalis assemblage B and first identification of assemblage E in rabbit fecal samples isolates from Central China. J Eukaryot Microbiol. 2015;62:810–4.

    CAS  Article  PubMed  Google Scholar 

  5. 5.

    Karim MR, Wang R, Yu F, Li T, Dong H, Li D, et al. Multi-locus analysis of Giardia duodenalis from nonhuman primates kept in zoos in China: geographical segregation and host-adaptation of assemblage B isolates. Infect Genet Evol. 2015;30:82–8.

    Article  PubMed  Google Scholar 

  6. 6.

    Farthing MJ. Giardiasis. Gastroenterol Clin North Am. 1996;25:493–515.

    CAS  Article  PubMed  Google Scholar 

  7. 7.

    Shin JC, Reyes AW, Kim SH, Kim S, Park HJ, Seo KW, et al. Molecular detection of Giardia intestinalis from stray dogs in animal shelters of Gyeongsangbuk-do (Province) and Daejeon, Korea. Korean J Parasitol. 2015;53:477–81.

    Article  PubMed  PubMed Central  Google Scholar 

  8. 8.

    Lane S, Lloyd D. Current trends in research into the waterborne parasite Giardia. Crit Rev Microbiol. 2002;28:123–47.

    Article  PubMed  Google Scholar 

  9. 9.

    Adriana G, Zsuzsa K, Mirabela Oana D, Mircea GC, Viorica M. Giardia duodenalis genotypes in domestic and wild animals from Romania identified by PCR-RFLP targeting the gdh gene. Vet Parasitol. 2016;217:71–5.

    CAS  Article  PubMed  Google Scholar 

  10. 10.

    Ramírez JD, Heredia RD, Hernández C, León CM, Moncada LI, Reyes P, et al. Molecular diagnosis and genotype analysis of Giardia duodenalis in asymptomatic children from a rural area in central Colombia. Infect Genet Evol. 2015;32:208–13.

    Article  PubMed  Google Scholar 

  11. 11.

    Santin M, Fayer R. Enterocytozoon bieneusi, Giardia, and Cryptosporidium infecting white-tailed deer. J Eukaryot Microbiol. 2015;62:34–43.

    CAS  Article  PubMed  Google Scholar 

  12. 12.

    Mohamed AS, Levine M, Camp JW, Jr Lund E, Yoder JS, Glickman LT, et al. Temporal patterns of human and canine Giardia infection in the United States: 2003–2009. Prev Vet Med. 2014;113:249–56.

    Article  PubMed  Google Scholar 

  13. 13.

    Ballweber LR, Xiao L, Bowman DD, Kahn G, Cama VA. Giardiasis in dogs and cats: update on epidemiology and public health significance. Trends Parasitol. 2010;26:180–9.

    Article  PubMed  Google Scholar 

  14. 14.

    Sprong H, Cacciò SM, van der Giessen JW. ZOOPNET network and partners. Identification of zoonotic genotypes of Giardia duodenalis. PLoS Negl Trop Dis. 2009;3:e558.

    Article  PubMed  PubMed Central  Google Scholar 

  15. 15.

    Li W, Li Y, Song M, Lu Y, Yang J, Tao W, et al. Prevalence and genetic characteristics of Cryptosporidium, Enterocytozoon bieneusi and Giardia duodenalis in cats and dogs in Heilongjiang province, China. Vet Parasitol. 2015;208:125–34.

    Article  PubMed  Google Scholar 

  16. 16.

    Beck R, Sprong H, Lucinger S, Pozio E, Cacciò SM. A large survey of Croatian wild mammals for Giardia duodenalis reveals a low prevalence and limited zoonotic potential. Vector Borne Zoonotic Dis. 2011;11:1049–55.

    Article  PubMed  Google Scholar 

  17. 17.

    Hamnes IS, Gjerde BK, Forberg T, Robertson LJ. Occurrence of Giardia and Cryptosporidium in Norwegian red foxes (Vulpes vulpes). Vet Parasitol. 2007;143:347–53.

    Article  PubMed  Google Scholar 

  18. 18.

    Qi M, Cai J, Wang R, Li J, Jian F, Huang J, et al. Molecular characterization of Cryptosporidium spp. and Giardia duodenalis from yaks in the central western region of China. BMC Microbiol. 2015;15:108.

  19. 19.

    Karim MR, Zhang S, Jian F, Li J, Zhou C, Zhang L, et al. Multilocus typing of Cryptosporidium spp. and Giardia duodenalis from non-human primates in China. Int J Parasitol. 2014;44:1039–47.

    CAS  Article  PubMed  Google Scholar 

  20. 20.

    Zhang W, Zhang X, Wang R, Liu A, Shen Y, Ling H, et al. Genetic characterizations of Giardia duodenalis in sheep and goats in Heilongjiang Province, China and possibility of zoonotic transmission. PLoS Negl Trop Dis. 2012;6:e1826.

    Article  PubMed  PubMed Central  Google Scholar 

  21. 21.

    Zhao GH, Du SZ, Wang HB, Hu XF, Deng MJ, Yu SK, et al. First report of zoonotic Cryptosporidium spp., Giardia intestinalis and Enterocytozoon bieneusi in golden takins (Budorcas taxicolor bedfordi). Infect Genet Evol. 2015;34:394–401.

    Article  PubMed  Google Scholar 

  22. 22.

    Li W, Liu C, Yu Y, Li J, Gong P, Song M, et al. Molecular characterization of Giardia duodenalis isolates from police and farm dogs in China. Exp Parasitol. 2013;135:223–6.

    CAS  Article  PubMed  Google Scholar 

  23. 23.

    Zhang W, Shen Y, Wang R, Liu A, Ling H, Li Y, et al. Cryptosporidium cuniculus and Giardia duodenalis in rabbits: genetic diversity and possible zoonotic transmission. PLoS One. 2012;7:e31262.

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  24. 24.

    Inpankaew T, Schär F, Odermatt P, Dalsgaard A, Chimnoi W, Khieu V, et al. Low risk for transmission of zoonotic Giardia duodenalis from dogs to humans in rural Cambodia. Parasit Vectors. 2014;7:412.

    Article  PubMed  PubMed Central  Google Scholar 

  25. 25.

    Xu H, Jin Y, Wu W, Li P, Wang L, Li N, et al. Genotypes of Cryptosporidium spp., Enterocytozoon bieneusi and Giardia duodenalis in dogs and cats in Shanghai, China. Parasit Vectors. 2016;9:121.

    Article  PubMed  PubMed Central  Google Scholar 

  26. 26.

    Pallant L, Barutzki D, Schaper R, Thompson RC. The epidemiology of infections with Giardia species and genotypes in well cared for dogs and cats in Germany. Parasit Vectors. 2015;8:2.

    Article  PubMed  PubMed Central  Google Scholar 

  27. 27.

    Beck R, Sprong H, Pozio E, Cacciò SM. Genotyping Giardia duodenalis isolates from dogs: lessons from a multilocus sequence typing study. Vector Borne Zoonotic Dis. 2012;12:206–13.

    Article  PubMed  Google Scholar 

  28. 28.

    Liu H, Shen Y, Yin J, Yuan Z, Jiang Y, Xu Y, et al. Prevalence and genetic characterization of Cryptosporidium, Enterocytozoon, Giardia and Cyclospora in diarrheal outpatients in China. BMC Infect Dis. 2014;14:25.

  29. 29.

    Upjohn M, Cobb C, Monger J, Geurden T, Claerebout E, Fox M. Prevalence, molecular typing and risk factor analysis for Giardia duodenalis infections in dogs in a central London rescue shelter. Vet Parasitol. 2010;172:341–6.

    Article  PubMed  Google Scholar 

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The authors thank the staff and workers in the raccoon dog farms who helped in the collection of faecal samples.


Project support was provided by the Key Scientific and Technological Project of Jilin Province (Grant No. 20140204068NY) and the China Agricultural Science and Technology Innovation Program (ASTIP) (Grant No. CAAS-ASTIP-2014-LVRI-03). The funders had no role in the design of the study and collection, analysis, and interpretation of data, and in writing the manuscript.

Availability of data and material

The newly-generated representative sequences were deposited in the GenBank database under the following accession numbers: KX014788 and KX014789 for the bg gene, KX014790–KX014792 for the gdh gene and KX014793–KX014805 for the tpi gene.

Authors’ contributions

XQZ conceived and designed the study, and critically revised the manuscript. XXZ, WBZ, JGM, QXY, YZ and CJB performed the experiments. XXZ and WBZ analyzed the data. XXZ drafted the manuscript. QZ helped in study design, study implementation and manuscript revision. All authors read and approved the final manuscript.

Competing interests

The authors declare that they have no competing interests.

Consent for publication

Not applicable.

Ethics approval and consent to participate

This study was approved by the Animal Ethics Committee of Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences. Farmed raccoon dogs used for the study were handled in accordance with good animal practices required by the Animal Ethics Procedures and Guidelines of the People’s Republic of China.

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Correspondence to Xing-Quan Zhu.

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Zhang, X., Zheng, W., Ma, J. et al. Occurrence and multilocus genotyping of Giardia intestinalis assemblage C and D in farmed raccoon dogs, Nyctereutes procyonoides, in China. Parasites Vectors 9, 471 (2016).

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  • Giardia intestinalis
  • Genotyping
  • Prevalence
  • Raccoon dogs
  • China