Sequence analysis and characterization of pyruvate kinase from Clonorchis sinensis, a 53.1-kDa homopentamer, implicated immune protective efficacy against clonorchiasis
Parasites & Vectors volume 10, Article number: 557 (2017)
Clonorchis sinensis, the causative agent of clonorchiasis, is classified as one of the most neglected tropical diseases and affects more than 15 million people globally. This hepatobiliary disease is highly associated with cholangiocarcinoma. As key molecules in the infectivity and subsistence of trematodes, glycolytic enzymes have been targets for drug and vaccine development. Clonorchis sinensis pyruvate kinase (CsPK), a crucial glycolytic enzyme, was characterized in this research.
Differences were observed in the sequences and spatial structures of CsPK and PKs from humans, rats, mice and rabbits. CsPK possessed a characteristic active site signature (IKLIAKIENHEGV) and some unique sites but lacked the N-terminal domain. The predicted subunit molecular mass (Mr) of CsPK was 53.1 kDa. Recombinant CsPK (rCsPK) was a homopentamer with a Mr. of approximately 290 kDa by both native PAGE and gel filtration chromatography. Significant differences in the protein and mRNA levels of CsPK were observed among four life stages of C. sinensis (egg, adult worm, excysted metacercaria and metacercaria), suggesting that these developmental stages may be associated with diverse energy demands. CsPK was widely distributed in adult worms. Moreover, an intense Th1-biased immune response was persistently elicited in rats immunized with rCsPK. Also, rat anti-rCsPK sera suppressed C. sinensis adult subsistence both in vivo and in vitro.
The sequences and spatial structures, molecular mass, and expression profile of CsPK have been characterized. rCsPK was indicated to be a homopentamer. Rat anti-rCsPK sera suppressed C. sinensis adult subsistence both in vivo and in vitro. CsPK is worthy of further study as a promising target for drug and vaccine development.
Clonorchis sinensis, the causative agent of clonorchiasis, predominantly occurs in East Asia, including China, parts of Russia, South Korea, and northern Vietnam. Globally, it has been estimated that over 200 million people are at risk for clonorchiasis and that more than 15 million persons, of whom 13 million are in China, are infected . Clonorchiasis represents a major tropical disease that is currently neglected . Clonorchis sinensis is considered a group I carcinogen and an important risk factor for cholangiocarcinoma, a fatal malignant tumour of the bile duct that is usually associated with poor prognosis. It has been estimated that as many as 5000 cholangiocarcinoma cases resulting from clonorchiasis may occur yearly for decades to come [2,3,4,5]. During long-term infections, the excretory/secretory products (ESPs) of the worms are continuously discharged into the host. Therefore, as molecules that participate in host-parasite interactions, ESPs have been targeted for vaccine and drug development [6,7,8].
Transcriptomic and genomic data show that the enzymes that participate in the glycolytic pathway and the Krebs cycle are expressed during C. sinensis infection [9, 10]. Exogenous glucose is transported in the musculature of C. sinensis adults and is broken down during glycolysis, yielding lactic acid as a major end product and providing metabolic intermediates as well as energy [11, 12]. Glycolytic enzymes are extremely pertinent to the infectivity and subsistence of trematodes, and they have been well characterized as potential targets for drug and vaccine development [6, 13,14,15].
As a central metabolic regulator in most species, pyruvate kinase (PK, EC: 126.96.36.199, ATP: pyruvate phosphotransferase) catalyses the final ratelimiting reaction in glycolysis, essentially irreversibly transforming phosphoenolpyruvate (PEP) to pyruvate with the formation of one molecule of ATP. Additionally, both the substrates and the products of PK are involved in many biosynthetic pathways as well as in energy metabolism, placing it at a crucial metabolic intersection. In many parasites, including Leishmania mexicana, Trypanosoma brucei, Toxoplasma gondii, Plasmodium falciparum and Schistosoma mansoni, PK is highly regulated, indicating that it may play crucial regulatory roles in glycolysis in these parasites [15,16,17,18,19]. PK is considered a compelling therapeutic target for malignant tumours as well as for human pathogens such as apicomplexans . Nearly all PKs exist as homotetramers [18, 21].
At present, research on the crucial glycolytic enzymes of C. sinensis is even more limited than research on the glycolytic enzymes of protozoa. Although PKs from L. mexicana [15, 22, 23], T. gondii [17, 20, 24], T. brucei , Trypanosoma cruzi , P. falciparum , Eimeria tenella , and Entamoeba histolytica  have been characterized in detail, the characteristics of C. sinensis PK (CsPK) as a potential target for drug and vaccine development are unknown.
CsPK is a 53.1-kDa homopentamer that possesses a characteristic active site signature (IKLIAKIENHEGV) as well as some unique sites but lacks the characteristic PK N-terminal domain. The mRNA levels, protein levels and tissue distribution of CsPK at various life stages of C. sinensis were characterized. A T helper cell (Th) 1-biased immune response was induced in rCsPK-immunized rats. Rat anti-rCsPK sera suppressed C. sinensis adult subsistence in vivo and in vitro. This research indicates that CsPK may be a promising candidate for the development of drugs and vaccines for clonorchiasis.
By using nucleotide sequence of PK gene (identify the query sequence), since they had used BLASTx algorithm (http://www.ncbi.nlm.nih.gov/), amino acid sequences of PK were retrieved from GenBank including that of C. sinensis (GAA54498.1). The physicochemical parameters and conserved domains of CsPK were analysed using bioinformatics tools (ProtParam, InterProScan) in ExPASy (http://www.expasy.org/). The linear B cell epitopes were analysed with BepiPred (http://tools.immuneepitope.org/main/). The putative tertiary structure of CsPK was simulated by comparative modelling using SWISS-MODEL (https://swissmodel.expasy.org/); the resulting structure was viewed using Swiss-Pdb Viewer and further evaluated using the Q-MEAN server. A phylogenetic tree of the PKs was constructed using the neighbour-joining method in MEGA version 5. Tests of phylogeny were conducted using the Bootstrap method with 1000 replications. Protein weight matrix was performed using Gonnet. The amino acid substitution model was constructed using the p-distance method.
Expression and purification of recombinant CsPK (rCsPK)
The open reading frame (ORF) of CsPK was amplified by the polymerase chain reaction (PCR) from the total cDNA of adult C. sinensis using specific primers (F: 5′-GCA CGG ATC CAT GCT ACA GAA GAT GA-3′, R: 5′-ATA GTC GAC AAA GCG GCT GAA GCT C-3′). The PCR products were purified and cloned into the prokaryotic expression vector pET-28a(+) (Novagen, Darmstadt, Germany). The recombinant plasmids were confirmed by digestion using the corresponding restriction enzymes and identified by DNA sequencing.
The recombinant plasmids were transformed into Escherichia coli BL21 (DE3) (Promega, Madison, USA). After being induced with 1 mM isopropyl-β-D-thiogalactopyranoside (Sigma-Aldrich, St. Louis, USA) at 37 °C for 6 h, the transformed cells were collected by centrifugation and sonicated on ice. rCsPK was overexpressed as inclusion bodies. The sediment containing the His-tagged recombinant protein (rCsPK) was washed with washing buffer (50 mM Tris-HCl, 50 mM NaCl, 1% Triton X-100, 1 mM EDTA, 2 M urea, pH 8.0) and dissolved in dissolving buffer (50 mM Tris-HCl, 50 mM NaCl, 1% Triton X-100, 1 mM EDTA, 6 M urea, pH 8.0) followed by centrifugation. The inclusion bodies dissolved readily in 6 M urea. The supernatant was applied to a Ni2+-NTA affinity column and eluted with a gradient of 5–300 mM imidazole containing 6 M urea. The protein eluted at 80–300 mM imidazole with high purity. The purified protein was renatured by sequential dialysis against solutions containing decreasing concentrations of urea (6 M to 0 M). Finally, the renatured protein was dialysed against phosphate-buffered saline (PBS).
The purified protein was subjected to electrophoresis on a 12% sodium dodecyl sulphate-polyacrylamide gel (SDS-PAGE) and identified by mass spectrometry (MS). Peptide mass spectra were performed on an ABI 4800 Proteomics Analyzer MALDI-TOF/TOF (Applied Biosystems, Md., USA). Both the MS and tandem mass spectrometry (MS/MS) data were interpreted and processed using the GPS Explorer software (version 3.6; Applied Biosystems, Md., USA) to match the protein name.
Preparation of parasites, total worm extracts, CsESPs and antisera against rCsPK/CsESPs
Clonorchis sinensis metacercariae were collected from experimentally infected freshwater Ctenopharyngodon idellus fish at our laboratory’s pool . Viability and integrity of metacercariae were assessed under a microscope. 0.001% trypsin (Promega) in physiological saline was employed as an excystation stimulus in vitro. After activation, some encysted metacercariae was immediately collected in RIPA lysis buffer containing 1 mM phenylmethanesulfonyl fluoride (PMSF; Bioteke, Beijing, China) for extraction of total protein. Moreover, some encysted metacercariae were immediately collected for extraction of total RNA using TRIzol (Invitrogen, California, USA). Each SD rat was intragastrically infected with 50 metacercariae. At week 8 post-infection, the rats were sacrificed, and adult C. sinensis were recovered from their bile ducts.
Total worm extracts, CsESPs and mouse anti-CsESPs sera were obtained as described previously . Briefly, living adult C. sinensis were cultured in DMEM (Gibco) under 5% CO2 at 37 °C. CsESPs were collected from the culture medium, treated with 1 mM PMSF, centrifuged and dialyzed in PBS. Living adult C. sinensis were crushed to prepare total worm extracts, stored at -80 °C. Rats and mice were subcutaneously immunized with 200/50 μg purified rCsPK emulsified with an equivalent volume of complete Freund’s adjuvant (Sigma-Aldrich) followed by 2 boosters of rCsPK (100/25 μg) emulsified with an equivalent volume of incomplete Freund’s adjuvant (Sigma-Aldrich) at 2-week intervals. Preimmune sera were harvested before the first immunization. Immune sera were harvested at 2-week intervals 2 to 24 weeks after immunization.
Determination of the apparent molecular mass (Mr) of rCsPK
Purified rCsPK was subjected to native PAGE on 8% gels. The Mr. of rCsPK was confirmed by determining the relationship between the log Mr. (kDa) of the standard marker proteins (Sigma-Aldrich) and their elution volumes (Ve) on AKTA FPLC using Sepharose 12 10/300 GL gel filtration chromatography (GFC) (GE Healthcare, Pittsburgh, USA) . The GFC column was run at a flow rate of 0.8 ml/min in 50 mM Tris-HCl containing 100 mM KCl (pH 7.5). Based on the deduced equation, the Mr. of rCsPK was derived using the obtained Ve of rCsPK.
Purified rCsPK (2.5 μg), CsESPs (25 μg) and total worm extract (25 μg) were separated by 12% SDS-PAGE and electrotransferred to a PVDF membrane in a Trans-Blot transfer cell (Bio-Rad, Hercules, USA) at 100 V for 1 h. The PVDF membranes were blocked with 5% skim milk in PBS (pH 7.4) at 4 °C overnight and then incubated with a mouse His-tagged monoclonal antibody (1:2000 dilution, Novagen, Darmstadt, Germany), mouse anti-rCsPK serum (1:2000 dilution), serum of mice infected with C. sinensis (1:2000 dilution), mouse anti-CsESP serum (1:2000 dilution) or preimmune mouse serum (1:2000 dilution) at RT for 2 h. After 3 washes in PBS, the membranes were incubated with HRP-conjugated goat anti-mouse IgG (1:2000 dilution) at RT for 1 h. After washing the membranes 5 times, detection was performed using chemiluminescence.
CsPK mRNA and protein levels at various life stages of C. sinensis
Total RNAs were isolated from the egg, adult, excysted metacercaria and metacercaria of C. sinensis using TRIzol (Invitrogen). Clonorchis sinensis β-actin (accession No. EU109284) was used as an internal control, which was amplified with specific primers 5′-ACC GTG AGA AGA TGA CGC AGA-3′ and 5′-GCC AAG TCC AAA CGA AGA ATT-3′. Real-time PCR was performed using the SYBR Premix Ex Taq Kit (Takara, Shiga, Japan) in the iQ5 Real-Time PCR Detection System (Bio-Rad, Hercules, USA) using specific primers 5′-AAG ATA AGG CAG ATT TAC GCT-3′ and 5′-CTG GGA TTT CAA TAC CAAGAT-3′. The PCR program was 95 °C for 5 min followed by 40 cycles of 95 °C for 10 s and 56 °C for 30 s. Melting curves were obtained by heating the samples to 95 °C for 30 s and 60 °C for 15 s followed by an increase in temperature to 95 °C. Semiquantitative analysis was conducted according to the 2-ΔΔCT method [29, 30].
Western blotting was used to study the levels of CsPK protein present at the above 4 life stages of C. sinensis. Parasites from those stages were suspended in RIPA lysis buffer containing 1 mM PMSF. A supernatant was obtained by centrifugation at 10,000 × g for 20 min at 4 °C. Total protein (40 μg) of each stage was subjected to 12% SDS-PAGE and blotted onto PVDF membrane. The blots were incubated with sera from mice immunized with rCsPK (1:200 dilution) or with mouse preimmune sera (1:200 dilution) followed by incubation with HRP-conjugated goat anti-mouse IgG (1:2000 dilution). Detection was performed with chemiluminescence. Relative protein levels were quantitated using Tanon Gis software (Tanon 4100, Shanghai, China).
Immunolocalization of CsPK in C. sinensis
Adults and metacercariae of C. sinensis were fixed in formalin, embedded in paraffin wax and cut into 5-μm-thick sections. After successive deparaffinization with xylene and hydration in a graded ethanol series, the sections were blocked with normal goat serum at RT for 2 h. The sections were then incubated with mouse anti-rCsPK serum (1:100 dilution) in a humidified chamber overnight at 4 °C. Mouse preimmune serum diluted at the same ratio was used as a negative control. The sections were washed 3 times with PBS containing 0.05% Tween-20 (PBS-T, pH 7.4) and 2 times in PBS followed by incubation with Cy3-conjugated goat anti-mouse IgG (1:400 dilution, Molecular Probes, USA) in the dark at RT for 1 h. BSA (0.1%) in PBS was used as the dilution buffer. The sections were imaged using a fluorescence microscope (Leica, Wetzlar, Germany).
Enzyme-linked immunosorbent assay (ELISA) of antibody titres and isotypes of IgG elicited by rCsPK
Microplates were incubated overnight at 4 °C with 2.5 μg/well-purified rCsPK in coating buffer (0.1 M carbonate-bicarbonate, pH 9.6). The plates were then blocked with 5% skim milk in PBS-T at 37 °C for 2 h. The protein bound to the wells was incubated with serial dilutions of the immune sera (obtained at week 6 following the first immunization) elicited by rCsPK followed by washing. Serum from rats or mice immunized with PBS was used as a negative control. HRP-conjugated goat anti-host specific IgG (1:20,000 dilution in 0.1% BSA PBS-T, Proteintech, Rosemont, USA) was used as the secondary antibody. After incubation for 1 h and 3 washes in PBS-T, 100 μl of substrate solution (TMB, BD Biosciences, San Diego, USA) was added to each well followed by incubation for 12 min in the dark. After the addition of 2 M H2SO4 to terminate the reaction, the absorbance at 450 nm was measured. The levels of total IgG and IgG isotypes in sera obtained at various time points (2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22 and 24 weeks after the first immunization) were also measured. The primary antibodies were diluted 1:400. HRP-conjugated goat anti-rat IgG (1:20,000 dilution) and IgG1/IgG2a (1:10,000 dilution, Bethyl, TX, USA) were used as secondary antibodies.
Immune protection conferred by rCsPK
Thirty-two 6-week-old SD rats were randomly separated into 4 groups: an adjuvant group, an infection group, a rCsPK group, and a PBS group (n = 8 for each group). The SD rats in the rCsPK and PBS groups received subcutaneous injections of either 200 μg rCsPK or an equal volume of PBS, respectively, emulsified with complete Freund’s adjuvant. Two boosters of 100 μg rCsPK or an equal volume of PBS emulsified with incomplete Freund’s adjuvant were given at 2-week intervals. The SD rats in the adjuvant group received subcutaneous injections of an equal volume of adjuvant. The SD rats in the infection group received no pretreatment.
After measurement of the animals’ antibody titres at 6 weeks after immunization, all rats were challenged by oral administration of 80 live C. sinensis metacercariae. The eggs per gram faeces (EPG) were calculated at week 6 post-infection. For worm burden evaluation, the rats were sacrificed 8 weeks post-infection, and adult C. sinensis were recovered from their livers. The EPG and worm burden were calculated blindly. The reduction in the parasite burden was calculated as follows: egg reduction rate (%) = [(average EPG of control group – average EPG of experimental group) / average EPG of control group] × 100%; worm reduction rate (%) = [(average worm burden of control group – average worm burden of experimental group) / average worm burden of control group] × 100% .
Culture of C. sinensis adults in the presence of rat anti-rCsPK sera
Clonorchis sinensis adults were recovered from infected rats, washed 4 times with sterilized PBS containing 1% antibiotics (streptomycin 100 U/ml and penicillin 100 μg/ml) and transferred to 12-well plates at 20 adults per well in 2 ml/well of low-glucose DMEM containing 1% antibiotics. Serum from rats that had been immunized with rCsPK or preimmune serum from the same animals was mixed with the medium at dilutions of 1:40–1:160. Low-glucose DMEM was used as the blank control. At 1–10, 15, 18, 20, 22, 24, 26 and 28 days of incubation, the adult worms were counted and monitored for 5 min using a microscope (Leica). Adults that failed to display pumping and muscle contraction after 5 continuous mechanical stimuli were classified as dead .
Statistics and software
All experiments were performed at least 3 times. SPSS software (version 17.0; SPSS, Inc., IL, USA) was employed for statistical analysis. Differences in IgG isotypes and immune protection between the groups were analysed using Student’s t-test. The survival rates of cultured adults were analysed using the Kaplan-Meier method, and differences between the groups were determined using the log-rank (Mantel-Cox) test. The results of the analyses are expressed as the mean ± standard deviation; significance was set at a P-value < 0.05.
Sequence analysis and putative spatial structure of CsPK
The ORF of CsPK is 1458 bp in length and encodes 485 amino acids (aa). In its protein sequence, CsPK shows the identities to the PK of Opisthorchis viverrini (99%), followed Schistosoma japonicum (80%), Brugia malayi (59%), Hymenolepis microstoma (39%) and Echinococcus granulosus (33%). The protein sequence included the characteristic active site signature (IKLIAKIENHEGV) (Fig. 1). This sequence, which occurs between amino acid residues 203 and 215 of CsPK, contains a lysine (K) residue that forms part of the catalytic site and that appears to be responsible for interconverting enolpyruvate and pyruvate. L205 was unique to CsPK, replacing the usual isoleucine (I). A207 of CsPK replaced the usual serine (S) found in the rat, mouse and human enzymes (Additional file 1: Figure S1). The consensus regions for the binding of PEP, ADP, and monovalent as well as divalent cations were well conserved.
In the sequence alignment, the 4 three-dimensional (3D) domains described for PK are shown. The N-terminal domain, which only appears in eukaryotic PKs, is very long in S. japonicum, T. gondii and E. tenella but absent in C. sinensis. Domains A and B, which contain the catalytic sites, are well conserved. In contrast, domain C, which contains the effector sites and is localized at the C-terminal end, is diverse . CsPK contains 22 predicted linear B cell epitopes and lacks a transmembrane region and a signal peptide. CsPK was predicted to be expressed in the cytosol .
The 3D structure of CsPK was simulated using SWISS-MODEL based on the molecular model of truncated TgPK1 (an N-terminal truncated version, Protein Data Bank PDB: 3GG8 ), which exhibited 44.67% identity to CsPK. The GMQE score of 0.74 and the Q-MEAN4 of -0.83 supported the quality of the model. CsPK consisted only of domain A (blue), domain B (red) and domain C (green). The catalytic sites appear at the interface of domains A and B (Additional file 1: Figure S1). It is notable that the K454-S459 region and the G413-D423 loop, which corresponds to the mobile loop in yeast PK , are components of the allosteric binding site .
In human PK-M2 (PDB: 3BJF ) and CsPK, the F16BP binding sites, which interact with the phosphate moieties, are also conserved with different conformations. The ribbon drawing shows a superposition between domain A of CsPK with the closed rabbit PK-M1 in complex with ATP and the inhibitor oxalate (PDB: 1A49 ). The significant residues of the two proteins are highly conserved and show diverse conformations.
In the active site of CsPK and in that of LmPYK-suramin (PDB: 3PP7 ) complexed with glycerol and suramin (an inhibitor of T. brucei glycolytic enzymes), the significant residues are highly conserved and exhibit the same conformation.
In the phylogenetic tree of PKs (Fig. 2), CsPK grouped very closely with the PKs of trematodes. CsPK was closely related to PKs of vertebrates, followed by those of nematodes and cestodes, whereas it was distantly related to the PKs of protozoa. Phylogenetic, sequence and structural analysis revealed that CsPK (T52 and E56) is related to the group of monovalent cation-dependent isozymes (type I) . In contrast, CsPKII (GAA58090.1, 245 aa) clusters with E. coli PKII (AAA24473.1), along with three isozymes from the protozoans T. gondii (KFH06835.1), P. falciparum (AAN35560) and T. parva (XP_764703.1). These results suggest a different evolutionary origin of the two isozymes in C. sinensis.
Expression and apparent Mr. of rCsPK
The putative theoretical isoelectric point of CsPK is 6.69, and its predicted subunit Mr. is 53.1 kDa. Purified rCsPK containing a 6× His-tag displayed a single band of approximately 58.0 kDa, consistent with the calculated Mr. (Fig. 3a, Lane 5). The peptides obtained from the purified protein, which was demonstrated by MS analysis, were matched to those of CsPK at a protein coverage of 20% (data not shown).
Native PAGE and molecular sieve chromatography were used to determine the protein’s multimeric status. In native PAGE (Fig. 3b), the mobility of rCsPK was between that of ferritin (440 kDa) and that of catalase (232 kDa). According to the equation describing the electrophoretic profile, the Mr. of rCsPK was approximately 290 kDa.In GFC, rCsPK eluted as a single peak between β-amylase (200 kDa) and ferritin (440 kDa) (Additional file 2: Figure S2).
rCsPK was recognized by a mouse His-tagged monoclonal antibody, mouse anti-rCsPK sera, sera of mice infected with C. sinensis and mouse anti-CsESPs sera; in all cases, a cross-reactive band of approximately 58.0 kDa (including the Mr. of the His-tag) was noted. This immunoreactive band did not appear on blots that had been probed with naive mouse sera. Additionally, CsESPs and total worm extracts probed with mouse anti-rCsPK sera, but not with preimmune sera, showed an immunoreactive band of approximately 53.1 kDa (Fig. 4).
mRNA and protein levels and immunolocalization of CsPK at the life stages of C. sinensis
The mRNA levels of CsPK were measured at the adult, egg, excysted metacercaria, and metacercaria stages of C. sinensis (Fig. 5a). Significant differences were observed in the mRNA levels of CsPK at the above 4 life stages (P < 0.01). The mRNA level of CsPK in the egg was higher than that in the adult (56.79-fold, t (2) = 17.392, P = 0.003), metacercaria (9.72-fold, t (2.02) = 15.844, P = 0.004) and excysted metacercaria (5.97-fold, t (4) = 14.477, P < 0.001).
A specific polypeptide of molecular weight approximately 53.1 kDa was detected with mouse anti-rCsPK sera by Western blotting analysis. The protein level of CsPK was highest in the egg, followed by excysted metacercaria, metacercaria and adult (Fig. 5b, c). No corresponding band was detected when preimmune mouse serum was used (data not shown).
In sections of adult worms (Fig. 6), strong fluorescence due to CsPK was observed in the oral sucker, ventral sucker, pharynx, genital pore, vitellarium, tegument, intestine, seminal receptacle, testicle, ovary, uterus and in eggs within the uterus. Moreover, strong fluorescence was apparent on the tegument, oral sucker, ventral sucker, and vitellarium, in metacercariae. No specific fluorescence was observed in negative controls incubated with preimmune mouse serum.
IgG isotypes and immune protective efficacy elicited by rCsPK
The titre of anti-rCsPK IgG in rats and mice was as high as 1:409,600 to 1:204,800 at week 6 post-immunization, indicating that the protein is strongly immunogenic (Fig. 7a, b). In rat anti-rCsPK sera, IgG2a and IgG1 levels increased at week 2 and reached peak values at 6 and 8 weeks. IgG1 levels decreased markedly after 16 weeks, whereas IgG2a levels were maintained at a high level until 24 weeks. Between 2 and 24 weeks post-immunization, the level of IgG2a was significantly higher than that of IgG1 (Fig. 7c).
The EPG values of the PBS group, the adjuvant group, the infection group, and the rCsPK group were 3983.3 ± 386.7; 4075.0 ± 473.0; 3895.8 ± 424.1; and 1716.7 ± 230.3, respectively. The numbers of worms recovered from the above 4 groups were 25.1 ± 4.8; 24.8 ± 5.3; 26.1 ± 5.1; and 11.2 ± 2.5, respectively (Table 1). The EPG and worm burden showed a marked decrease in the rCsPK group compared with the control groups (t (11.410) = 14.245, P < 0.001; t (14) = 7.299, P < 0.001). The egg reduction rate and worm reduction rates were 56.90% and 55.22% (compared with the PBS group), respectively. No significant difference in EPG or worm burden was observed among the PBS, adjuvant, and infection groups.
Rat anti-rCsPK sera affects C. sinensis adult subsistence in vitro
The median survival times of C. sinensis adults in the blank control group, in preimmune sera groups (with 1:40, 1:80 or 1:160 dilution), and in anti-rCsPK sera groups (with 1:40, 1:80 or 1:160 dilution) were 15, 8, 8, 9, 2, 3 and 4 days, respectively (Fig. 8). No significant difference in survival rate was observed among preimmune sera groups with different dilution (P > 0.05). There were dominant differences of survival rates among all other groups (P < 0.01).
In the present research, we investigated and compared the sequence and spatial structure of CsPK with those of PKs from humans, rats, mice, and rabbits, all of which are definitive hosts of C. sinensis. CsPK is a 53.1-kDa homopentamer PK that lacks the characteristic N-terminal domain but possesses a characteristic active site signature (IKLIAKIENHEGV) and some unique sites. The mRNA levels, protein levels and immunolocalization of CsPK at various life stages of C. sinensis were characterized. CsPK was a component of CsESPs. Also, a Th1-biased immune response was elicited in rats immunized with rCsPK. Furthermore, rat anti-rCsPK sera suppressed C. sinensis adult subsistence both in vivo and in vitro.
The protein sequence and spatial structure analysis revealed that CsPK possesses the typical characteristics of a PK (Fig. 1, Additional file 1: Figure S1). To our knowledge, a homopentamer PK from any organism has not previously been reported. The peptides of rCsPK were analysed by MS analysis (data not shown). Based on SDS-PAGE, the Mr. of rCsPK was approximately 58 kDa (including a His-tag) (Fig. 3b). A band of approximately 58 kDa in rCsPK reacted with a mouse His-tagged monoclonal antibody (Fig. 4), whereas the Mr. of rCsPK was approximately 290 kDa, as confirmed by native PAGE and GFC (Fig. 3, Additional file 2: Figure S2). The above results indicate that CsPK is a homopentamer, whereas almost all PKs from other species are homotetrameric enzymes [18, 21].
The X-ray crystallographic structures of some PKs of diverse organisms (such as E. coli, L. mexicana, yeast, rabbit muscle, human, and cat) are highly similar with respect to ordinary PK topology [23, 34,35,36,37,38,39]. PKs are homotetrameric enzymes consisting of identical subunits of approximately 50–60 kDa; each subunit consists of 3 to 4 domains: N (a variable N-terminal domain), A, B, and C [23, 40]. The N-terminal helical domain is only present in eukaryotic PKs and can be removed from human erythrocyte PK without affecting the enzyme’s activity or stability . The N-terminal domain is very long in S. japonicum but was absent in C. sinensis.
In each subunit, the catalytic sites lie at the interface of domains A and B, and the allosteric sites are located in domain C (Fig. 1, Additional file 1: Figure S1) [20, 35, 37]. Multiple alignment of the protein sequences of PKs from parasitic species with those of human, rat, and mouse PKs (Fig. 1) showed that the known binding sites of PEP, cations and ADP, which lie within domains A and B, are well conserved (47–100%), whereas the effector binding sites, which lie within domain C, are more divergent in some species. In this research, domain A was found to be much more highly conserved (27%) than domains B (10%) and C (3%). This result is consistent with results obtained for PKs from various species . Interestingly, in the characteristic active site signature of CsPK (IKLIAKIENHEGV), L205 and A207 replace the usual isoleucine (I) and serine (S) found in the rat, mouse and human enzymes. Phylogenetic analysis revealed marked differences between CsPK and PKs from the definitive hosts of C. sinensis, cat, rat, human and mouse (Fig. 2).
In contrast to the similarities in the sequence motifs found in the A and B domains, the putative sites for effector binding located in domain C, which participate in the allosteric regulation of PKs, are not conserved between parasite and host isoforms. In addition, some sites that are important for effector binding in domain C and L205 in the characteristic active site signature of the PKs are unique to CsPK (Fig. 1). The findings reported above are particularly interesting with respect to the development of selective and specific inhibitors of parasite PK. Despite the presence of identical catalytic sites and the high sequence conservation (95%) of the M1-spliced isoform, selective targeting of human PK-M2 that included only the region involved in allosteric regulation was shown to offer a chance of targeting cellular metabolism for the treatment of malignant tumours [40, 42]. This provides proof of principle that PKs might be selectively targeted despite the presence of high degrees of homology among the enzymes from various species .
In human PK-M2 and CsPK, the F16BP binding sites, which interact with phosphate moieties , are very conservative with different conformations (Additional file 1: Figure S1). In the active sites of CsPK and LmPYK-suramin complexed with glycerol and suramin (an inhibitor of T. brucei glycolytic enzymes) , the significant residues are highly conserved and display the same conformation (Additional file 1: Figure S1). These observations offer new insight into the mechanism of regulation and the functional features of CsPK as well as into its potential as a drug target for clonorchiasis.
rCsPK reacted with mouse anti-rCsPK sera by Western blotting, revealing its good immunoreactivity. The recognition of rCsPK by sera of mice infected with C. sinensis hints that CsPK might be a component of circulating antigens [43, 44]. Additionally, rCsPK reacted with mouse anti-CsESPs sera. Furthermore, CsESPs were recognized by mouse anti-rCsPK sera, showing a band of approximately 53.1 kDa. These results demonstrate that CsPK is also a component of ESPs.
As the key glycolytic enzyme, CsPK was widely distributed in the tissues of adult worm, suggesting that CsPK is significant for C. sinensis. The locations in which CsPK was found included the pharynx, the intestine, and the tegument, tissues from which ESPs are released . In trematodes, the tegument functions as a dynamic organ that participates in mutual interactions between the parasite and host. Trematode tegument is composed of the syncytial membrane that is highly active in nutrient uptake. The presence of CsPK in ESPs might result from the shedding and recondition of the tegument . The trematode intestine is a site of nutrient absorption and digestion as well as an important source of ESPs . With the addition of its distribution in tegument, as occurs in fodinichnia, CsPK may be involved in obtaining a sustainable energy supply through the digestion and absorption of glucose from the host.
The localization of CsPK within the musculature, including the pharynx, the oral sucker, and the ventral sucker, may be related to energy demands for adhesion behaviour as well as muscular contraction. Its localization in generative organs, including the ovary, vitellarium, uterus, testis, genital pore, and seminal receptacle, hints that the enzymatic activity of CsPK in glucose metabolism in the above organs may be needed to satisfy the energy requirements of C. sinensis for growth and reproduction. The vitellarium of the trematode makes a critical contribution to egg production by providing nutrients to the oosperm, providing eggshell material, and related catalytic activities .
Bioinformatics analysis indicated that CsPK contains numerous predicted T cell as well as B cell epitopes. The high levels of specific antibodies induced by rCsPK may be attributed to its variety of B cell epitopes. It is well known that IgG1 and IgG2a are elicited by Th2 and Th1, respectively. These data suggest that rCsPK elicits Th1-biased immunoreaction.
During long-term infection, Th1 to Th2 shift has been shown to occur and to result in long-term persistence of adult worms as well as chronic clonorchiasis . Th1 cells direct protective pro-inflammatory immune responses . Experiments have shown that the levels of IgG2 and IgG1 antibodies in protected animals are 100-fold and 10-fold higher than those of unprotected animals. The protective effect is strongly associated with the avidity, and the titre of IgG2 antibodies elicited [50, 51]. In addition, an effective Th1 immunoreaction is essential for successful vaccine inoculation against a majority of viral as well as bacterial pathogens . The Th1-biased immune response observed for CsPK revealed its high immunogenicity and might account for its protective efficacy.
Nucleic acid-based, as well as protein-based vaccines for clonorchiasis, have been reported. Some DNA vaccines elicit Th1-biased immune responses, whereas other DNA vaccines and protein vaccines elicit combined Th1/Th2 immune responses . In contrast, rCsPK elicited a Th1-biased immune response. A majority of proteins that are regarded as vaccine candidates are ESPs or tegumental proteins. CsPK was identified as a component of ESPs and was shown to be deposited on the tegument of adult worms and metacercariae. Rat anti-rCsPK sera inhibited C. sinensis adult subsistence in vivo and in vitro. Our results indicate that CsPK may be a promising candidate for the development of vaccines for clonorchiasis.
CsPK is a 53.1-kDa homopentamer PK without a characteristic N-terminal domain; it possesses a characteristic active site signature (IKLIAKIENHEGV) and some unique sites. CsPK was widely distributed in the tissues and organs of adult worms, including the oral sucker, ventral sucker, pharynx, genital pore, vitellarium, tegument, intestine, seminal receptacle, testicle, ovary, uterus and in eggs within the uterus. It was shown to be a component of CsESPs. rCsPK possesses strong immunogenicity as well as immunoreactivity. rCsPK provoked a Th1-biased immune response. In addition, rat anti-rCsPK sera suppressed C. sinensis adult subsistence in vivo and in vitro. This research reveals that CsPK might be a promising vaccine candidate and that it has potential as a drug target against C. sinensis infection. The selective development of specific inhibitors against CsPK and its immune protective mechanisms are worthy of further study.
Bovine sera albumin
ESPs of C. sinensis
Clonorchis sinensis pyruvate kinase
Enzyme-linked immunosorbent assay
Eggs per gram faeces
Open reading frame
Polymerase chain reaction
T helper cells
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We would like to thank Dr Kunhua Hu and Professor Mingtao Li of the Proteomics Centre of Zhongshan School of Medicine, Sun Yat-sen University, for performing the MS analysis in this study. We gratefully thank Yinjuan Wu, Zhipeng Lin, Xinyi Zhou, Lina Zhou, Caiqin Wang, Xiangzhan Kong, Zhuxiu Hou, and Zeli Tang, Department of Parasitology of Zhongshan School of Medicine, Sun Yat-sen University, for excellent technical support in this study.
This work was supported by the national key research and development program of China (No. 2017YFD0501300 to XY), the Science and Technology Planning Project of Guangdong Province (No. 2016A050502008 to XY), the Young Teachers’ Cultivation Project of Basic Scientific Research Service Fee in Colleges and Universities (No.16ykpy06 to TC), the National Natural Science Foundation of China (No. 81772212 to XY). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Availability of data and materials
DNA sequences and amino acid sequences were obtained from GenBank (https://www.ncbi.nlm.nih.gov/genbank/) and DDBJ (http://www.ddbj.nig.ac.jp/). Structural files of truncated TgPK1 (PDB: 3GG8), the closed rabbit PK-M1 complexed with ATP and the inhibitor oxalate (PDB: 1A49), human PK-M2 (PDB: 3BJF) and LmPYK-suramin (PDB: 3PP7) were downloaded from the PDB database (http://www.rcsb.org/pdb/home/home.do). All data generated or analysed during this study are included in this article and its additional files.
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SD rats and BALB/c mice were purchased from the animal centre of Sun Yat-sen University and raised carefully according to the National Institutes of Health Guide for the Care and Use of Laboratory Animals. All experimental procedures were authorized by the Animal Care and Use Committee of Sun Yat-sen University (Permit Numbers: SCXK (Guangdong) 2010–0107).
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Putative tertiary modelling of CsPK. K+ and Mg2+ ions are shown as grey and black spheres, respectively. The N-terminal domain is shown in black. a Ribbon drawing of superposed structure models of CsHK (darker tone) and truncated TgPK1 (lighter tone). The A, B, and C domains of CsHK are shown in blue, red and green, respectively. The catalytic site at the interface of domains A and B and the allosteric site in domain C are highlighted. b Ribbon representation of F16BP (red stick) binding sites of human PK-M2 (lighter tone). S434, S437 (yellow stick), W482 (magenta stick), and R489 (orange stick), which interact with the phosphate moieties, are indicated. The putative corresponding structure of CsPK (darker tone) is shown in panel c. In the active site signature of PK, I267 and S269 (dark red sticks) are replaced by L205 and A207 (blue-violet sticks) in CsHK. Oxalate is indicated as a ball model. d Ribbon representation of the K+-PK-MgIIoxalate-MgIIATP complex closed active site (rabbit PK-M1). ATP, oxalate, and significant residues are shown as red, magenta, and yellow sticks, respectively. e Ribbon drawing of the superposition between the A domains of CsPK with the closed rabbit PK-M1 in complex with ATP and oxalate (dark and lighter tones, respectively). The corresponding significant residues of CsPK are shown in orange (stick). K+ and Mg2+ ions, ATP and oxalate, are shown for reference, with their positions derived from a superposition with 1A49. f Ribbon drawing of superposed structural models of CsPK (darker tone) and LmPYK-suramin (lighter tone) complexed with glycerol (magenta stick) and suramin (an inhibitor of T. brucei glycolytic enzymes, red stick). g Enlargement of the active site of the LmPYK-suramin structure. Significant residues are coloured yellow (stick). The putative corresponding structure of CsPK is shown in panel h. The corresponding significant residues of CsPK are coloured orange (stick). (TIFF 2964 kb)
Apparent Mr. of rCsPK. a Determination of the Mr. of rCsPK using 8% native PAGE according to Fig. 3b. After plotting the HRm values of the standard markers against their Mrs., we drew a curve, fitted an equation to the curve, and used the equation for calculating the Mr. of rCsPK. b Elution profile of rCsPK in GFC. c Mr. of rCsPK as detected with GFC. The calibration curve relating the elution volumes (Ve) and the log Mr. (kDa) of standard marker proteins were obtained with AKTA FPLC using a Sepharose 12 10/300 GL GFC column. Based on the deduced equation, the Mr. of rCsPK was calculated from the obtained Ve of rCsPK. (TIFF 252 kb)
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Chen, T., Jiang, H., Sun, H. et al. Sequence analysis and characterization of pyruvate kinase from Clonorchis sinensis, a 53.1-kDa homopentamer, implicated immune protective efficacy against clonorchiasis. Parasites Vectors 10, 557 (2017). https://doi.org/10.1186/s13071-017-2494-9