Denis A, Gabron C, Lambert A. Presence en France du deux parasites d’origine Est-asiatique: Diplozoon nipponicum Goto 1891 et Bothriocephalus acheilognathi Yamaguti, 1934 (Cestoda) chez Cyprinus carpio (Teleostei, Cyprinidae). Bull Fr Piscic. 1983;289:128–34.
Article
Google Scholar
Matějusová I, Koubková B, D’ Amelio S, Cunningham CO. Genetic characterization of six species of diplozoids (Monogenea; Diplozoidae). Parasitology. 2001;123:465–74.
PubMed
Google Scholar
Fisheries and Aquaculture Department. About us - Fisheries and Aquaculture Department.. http://www.fao.org/fishery/about/en Updated 17 March 2017.
Kawatsu H. Studies on the anemia of fish-IX, hypochromic microcytic anemia of crucian carp caused by infestation with a trematode, Diplozoon nipponicum. Bull Japan Soc Sci fish. 1978;44:1315–9.
Article
Google Scholar
Smyth JD, Halton DW. The Monogenean - functional morphology. In: Smyth JD, Halton DW, editors. The Physiology of Trematodes. Cambridge: Cambridge University Press; 1983. p. 250–88.
Smyth JD, Halton DW. The Monogenean – physiology. In: Smyth JD, Halton DW, editors. The Physiology of Trematodes. Cambridge: Cambridge University Press; 1983. p. 289–320.
Hodová I, Matějusová I, Gelnar M. The surface topography of Eudiplozoon nipponicum (Monogenea) developmental stages parasitizing carp (Cyprinus carpio L.). Cent Eur J Biol. 2010;5:702–9.
Google Scholar
Valigurová A, Hodová I, Sonnek R, Koubková B, Gelnar M. Eudiplozoon nipponicum in focus: monogenean exhibiting a highly specialized adaptation for ectoparasitic lifestyle. Parasitol Res. 2011;108:383–94.
Konstanzová V, Koubková B, Kašný M, Ilgová J, Dzika E, Gelnar M. Ultrastructure of the digestive tract of Paradiplozoon homoion (Monogenea). Parasitol Res. 2015;114:1485–94.
Article
PubMed
Google Scholar
Sonenshine D. Biology of ticks. Volume 1. New York: Oxford University Press; 1991.
Google Scholar
Sojka D, Franta Z, Horn M, Caffrey CR, Mareš M, Kopáček P. New insights into the machinery of blood digestion by ticks. Trends Parasitol. 2013;29:276–85.
Article
CAS
PubMed
Google Scholar
Jedličková L, Dvořáková H, Kašný M, Ilgová J, Potěšil D, Zdráhal Z, et al. Major acid endopeptidases of the blood-feeding monogenean Eudiplozoon nipponicum (Heteronchoinea: Diplozoidae). Parasitology. 2016;143:494–506.
Article
PubMed
Google Scholar
Sajid M, JH MK. Cysteine proteases of parasitic organisms. Mol Biochem Parasitol. 2002;120:1–21.
Article
CAS
PubMed
Google Scholar
Williamson AL, Brindley PJ, Knox DP, Hotez PJ, Loukas A. Digestive proteases of blood-feeding nematodes. Trends Parasitol. 2003;19:417–23.
Article
PubMed
Google Scholar
Williamson AL, Lecchi P, Turk BE, Choe Y, Hotez PJ, JH MK, et al. A multi-enzyme cascade of hemoglobin proteolysis in the intestine of blood-feeding hookworms. J Biol Chem. 2004;279:35950–7.
Article
CAS
PubMed
Google Scholar
Delcroix M, Sajid M, Caffrey CR, Lim KC, Dvořák J, Hsieh I, et al. A multienzyme network functions in intestinal protein digestion by a platyhelminth parasite. J Biol Chem. 2006;281:39316–29.
Article
CAS
PubMed
Google Scholar
Atkinson H, Babbitt P, Sajid M. The global cysteine peptidase landscape in parasites. Trends Parasitol. 2009;25:573–81.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kašný M, Mikeš L, Hampl V, Dvořák J, Caffrey CR, Dalton JP, et al. Peptidases of trematodes. Adv Parasitol. 2009;69:205–97.
Article
PubMed
Google Scholar
Robinson MW, Dalton JP. Cysteine proteases of pathogenic organisms (Vol. 712). Boston: Springer; 2011.
Book
Google Scholar
McVeigh P, Maule AG, Dalton JP, Robinson MW. Fasciola hepatica virulence-associated cysteine peptidases: a systems biology perspective. Microbes Infect. 2012;14:301–10.
Article
CAS
PubMed
Google Scholar
NCBI Resource Coordinators NR. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2016;44:D7–19.
Rawlings ND, Barrett AJ, Finn R. Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 2016;44:D343–50.
Article
CAS
PubMed
Google Scholar
The UniProt Consortium. UniProt: the universal protein knowledgebase. Nucleic Acids Res. 2017;45:D158–69.
Article
Google Scholar
Boutet E, Lieberherr D, Tognolli M, Schneider M, Bansal P, Bridge AJ, et al. UniProtKB/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase: how to use the entry view. Methods Mol Biol. 2016;1374:23–54.
Article
CAS
PubMed
Google Scholar
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, et al. The protein data bank. Nucleic Acids Res. 2000;28:235–42.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, et al. DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res. 2016;44:D51–7.
Article
CAS
PubMed
Google Scholar
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega. Mol Syst Biol. 2011;7:539.
Article
PubMed
PubMed Central
Google Scholar
Bray NL, Pimentel H, Melsted P, Pachter L. Near-optimal probabilistic RNA-seq quantification. Nat Biotechnol. 2016;34:525–7.
Article
CAS
PubMed
Google Scholar
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 2011;8:785–6.
Article
CAS
PubMed
Google Scholar
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, et al. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 2012;40:W597–603.
Article
CAS
PubMed
PubMed Central
Google Scholar
Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, KT-BG S, et al. Precision mapping of the human O-GalNAc glycoproteome through Simple Cell technology. EMBO J. 2013;32:1478–88.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2007;35:D61–5.
Article
CAS
PubMed
Google Scholar
Howe KL, Bolt BJ, Shafie M, Kersey P, Berriman M. WormBase ParaSite - a comprehensive resource for helminth genomics. Mol Biochem Parasitol. 2017;215:2–10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Frickey T, Lupas A. CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics. 2004;20:3702–4.
Article
CAS
PubMed
Google Scholar
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22:1658–9.
Article
CAS
PubMed
Google Scholar
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
Criscuolo A, Gribaldo S. BMGE (block mapping and gathering with entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol. 2010;10:210.
Article
PubMed
PubMed Central
Google Scholar
Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32:268–74.
Article
CAS
PubMed
Google Scholar
Caffrey CR, Salter JP, Lucas KD, Khiem D, Hsieh I, Lim K-C, et al. SmCB2, a novel tegumental cathepsin B from adult Schistosoma mansoni. Mol Biochem Parasitol. 2002;121:49–61.
Article
CAS
PubMed
Google Scholar
Dvořák J, Delcroix M, Rossi A, Vopálenský V, Pospíšek M, Šedinová M, et al. Multiple cathepsin B isoforms in schistosomula of Trichobilharzia regenti: identification, characterisation and putative role in migration and nutrition. Int J Parasitol. 2005;35:895–910.
Article
PubMed
Google Scholar
Wang B-L, Xu Y, Wu C-Q, Xu Y-M, Wang H-H. Cloning, expression, and refolding of a secretory protein ESAT-6 of Mycobacterium tuberculosis. Protein Expr Purif. 2005;39:184–8.
Article
CAS
PubMed
Google Scholar
Greenbaum D, Baruch A, Hayrapetian L, Darula Z, Burlingame A, Medzihradszky KF, et al. Chemical approaches for functionally probing the proteome. Mol Cell Proteomics. 2002;1:60–8.
Article
CAS
PubMed
Google Scholar
Sajid M, JH MK, Hansell E, Mathieu MA, Lucas KD, Hsieh I, et al. Functional expression and characterization of Schistosoma mansoni cathepsin B and its trans-activation by an endogenous asparaginyl endopeptidase. Mol Biochem Parasitol. 2003;131:65–75.
Article
CAS
PubMed
Google Scholar
Quack T, Knobloch J, Beckmann S, Vicogne J, Dissous C, Grevelding CG. The formin-homology protein SmDia interacts with the Src Kinase SmTK and the GTPase SmRho1 in the gonads of Schistosoma mansoni. PLoS One. 2009;4:e6998.
Article
PubMed
PubMed Central
Google Scholar
ECH H, Donaldson ME, Saville BJ. Detection of antisense RNA transcripts by strand-specific RT-PCR. Methods Mol Biol. 2010;630:125–38.
Article
Google Scholar
Šácha P, Knedlík T, Schimer J, Tykvart J, Parolek J, Navrátil V, et al. iBodies: modular synthetic antibody mimetics based on hydrophilic polymers decorated with functional moieties. Angew Chem Int Ed Engl. 2016;55:2356–60.
Article
PubMed
PubMed Central
Google Scholar
Baig S, Damian RT, Peterson DS. A novel cathepsin B active site motif is shared by helminth bloodfeeders. Exp Parasitol. 2002;101:83–9.
Article
CAS
PubMed
Google Scholar
Tort J, Brindley PJ, Knox D, Wolfe KH, Dalton JP. Proteinases and associated genes of parasitic helminths. Adv Parasitol. 1999;43:161–266.
Article
CAS
PubMed
Google Scholar
Dalton JP, Caffrey CR, Sajid M, Stack C, Donnelly S, Loukas A, et al. Proteases in trematode biology. In: Maule A, Marks N, editors. Parasitic flatworms: molecular biology, biochemistry, immunology and physiology. Cambridge: CABI; 2006. p. 348–68.
Smooker PM, Whisstock JC, Irving JA, Siyaguna S, Spithill TW, Pike RN. A single amino acid substitution affects substrate specificity in cysteine proteinases from Fasciola hepatica. Protein Sci. 2000;9:2567–72.
Article
CAS
PubMed
PubMed Central
Google Scholar
Stack CM, Caffrey CR, Donnelly SM, Seshaadri A, Lowther J, Tort JF, et al. Structural and functional relationships in the virulence-associated cathepsin L proteases of the parasitic liver fluke, Fasciola hepatica. J Biol Chem. 2008;283:9896–908.
Article
CAS
PubMed
Google Scholar
Norbury LJ, Hung A, Beckham S, Pike RN, Spithill TW, Craik CS, et al. Analysis of Fasciola cathepsin L5 by S2 subsite substitutions and determination of the P1-P4 specificity reveals an unusual preference. Biochimie. 2012;94:1119–27.
Article
CAS
PubMed
Google Scholar
Pillay D, Boulangé AF, THT C. Expression, purification and characterisation of two variant cysteine peptidases from Trypanosoma congolense with active site substitutions. Protein Expr Purif. 2010;74:264–71.
Article
CAS
PubMed
Google Scholar
Lecaille F, Choe Y, Brandt W, Li Z, Craik CS, Brömme D. Selective inhibition of the collagenolytic activity of human cathepsin K by altering its S2 subsite specificity. Biochemistry. 2002;41:8447–54.
Article
CAS
PubMed
Google Scholar
Corvo I, Cancela M, Cappetta M, Pi-Denis N, Tort JF, Roche L. The major cathepsin L secreted by the invasive juvenile Fasciola hepatica prefers proline in the S2 subsite and can cleave collagen. Mol Biochem Parasitol. 2009;167:41–7.
Article
CAS
PubMed
Google Scholar
Choe Y, Leonetti F, Greenbaum DC, Lecaille F, Bogyo M, Brömme D, et al. Substrate profiling of cysteine proteases using a combinatorial peptide library identifies functionally unique specificities. J Biol Chem. 2006;281:12824–32.
Article
CAS
PubMed
Google Scholar
Brömmes D, Bonneaug PR, Lachance P, Storer AC. Engineering the S2 subsite specificity of human cathepsin S to a cathepsin L-and cathepsin B-like specificity. J Biol Chem. 1994;269:30238–42.
Google Scholar
Lartillot N, Brinkmann H, Philippe H. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 2007;7:S4.
Article
PubMed
PubMed Central
Google Scholar
Dolečková K, Kašný M, Mikeš L, Cartwright J, Jedelský P, Schneider EL, et al. The functional expression and characterisation of a cysteine peptidase from the invasive stage of the neuropathogenic schistosome Trichobilharzia regenti. Int J Parasitol. 2009;39:201–11.
Article
PubMed
PubMed Central
Google Scholar
McGrath ME. The lysosomal cysteine proteases. Annu Rev Biophys Biomol Struct. 1999;28:181–204.
Article
CAS
PubMed
Google Scholar
Mikeš L, Man P. Purification and characterization of a saccharide-binding protein from penetration glands of Diplostomum pseudospathaceum - a bifunctional molecule with cysteine protease activity. Parasitology. 2003;127:69–77.
Brady CP, Brindley PJ, Dowd AJ, Dalton JP. Schistosoma mansoni: differential expression of cathepsins L1 and L2 suggests discrete biological functions for each enzyme. Exp Parasitol. 2000;94:75–83.
Article
CAS
PubMed
Google Scholar
Dvořák J, Mashiyama ST, Sajid M, Braschi S, Delcroix M, Schneider EL, et al. SmCL3, a gastrodermal cysteine protease of the human blood fluke Schistosoma mansoni. PLoS Negl Trop Dis. 2009;3:e449.
Article
PubMed
PubMed Central
Google Scholar
Lowther J, Robinson MW, Donnelly SM, Xu W, Stack CM, Matthews JM, et al. The importance of pH in regulating the function of the Fasciola hepatica cathepsin L1 cysteine protease. PLoS Negl Trop Dis. 2009;3:e369.
Article
PubMed
PubMed Central
Google Scholar
Franta Z, Sojka D, Frantová H, Dvořák J, Horn M, Srba J, et al. IrCL1 - the haemoglobinolytic cathepsin L of the hard tick, Ixodes ricinus. Int J Parasitol. 2011;41:1253–62.
Article
CAS
PubMed
Google Scholar
Brinker A, Weber E, Stoll D, Voigt J, Müller A, Sewald N, et al. Highly potent inhibitors of human cathepsin L identified by screening combinatorial pentapeptide amide collections. Eur J Biochem. 2000;267:5085–92.
Article
CAS
PubMed
Google Scholar
Steverding D. The cathepsin B-selective inhibitors CA-074 and CA-074Me inactivate cathepsin L under reducing conditions. Open Enzym Inhib J. 2011;4:11–6.
Article
CAS
Google Scholar
Steverding D, Sexton DW, Wang X, Gehrke SS, Wagner GK, Caffrey CR. Trypanosoma brucei: chemical evidence that cathepsin L is essential for survival and a relevant drug target. Int J Parasitol. 2012;42:481–8.
Article
CAS
PubMed
Google Scholar
Mindell JA. Lysosomal acidification mechanisms. Annu Rev Physiol. 2012;74:69–86.
Article
CAS
PubMed
Google Scholar
Chappell CL, Dresden MH. Schistosoma mansoni: Proteinase activity of “hemoglobinase” from the digestive tract of adult worms. Exp Parasitol. 1986;61:160–7.
Article
CAS
PubMed
Google Scholar
Halton DW. Nutritional adaptations to parasitism within the Platyhelminthes. Int J Parasitol. 1997;27:693–704.
Dalton JP, Skelly P, Halton DW. Role of the tegument and gut in nutrient uptake by parasitic platyhelminths. Can J Zool. 2004;82:211–32.
Article
Google Scholar
Robinson MW, Corvo I, Jones PM, George AM, Padula MP, To J, et al. Collagenolytic activities of the major secreted cathepsin L peptidases involved in the virulence of the helminth pathogen, Fasciola hepatica. PLoS Negl Trop Dis. 2011;5:e1012.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, et al. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell. 2010;143:1018–29.
Article
CAS
PubMed
PubMed Central
Google Scholar
Osato N, Yamada H, Satoh K, Ooka H, Yamamoto M, Suzuki K, et al. Antisense transcripts with rice full-length cDNAs. Genome Biol. 2003;5:R5.
Article
PubMed
PubMed Central
Google Scholar
Steigele S, Nieselt K. Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes. Nucleic Acids Res. 2005;33:5034–44.
Article
CAS
PubMed
PubMed Central
Google Scholar
Henke C, Strissel PL, Schubert M-T, Mitchell M, Stolt CC, Faschingbauer F, et al. Selective expression of sense and antisense transcripts of the sushi-ichi-related retrotransposon-derived family during mouse placentogenesis. Retrovirology. 2015;12:9.
Article
PubMed
PubMed Central
Google Scholar
Pelechano V, Steinmetz LM. Gene regulation by antisense transcription. Nat Rev Genet. 2013;14:880–93.
Article
CAS
PubMed
Google Scholar
Illy C, Quraishi O, Wang J, Purisima E, Vernet T, Mort JS. Role of the occluding loop in cathepsin B activity. J Biol Chem. 1997;272:1197–202.
Article
CAS
PubMed
Google Scholar
Michel A, Ghoneim H, Resto M, Klinkert MQ, Kunz W. Sequence, characterization and localization of a cysteine proteinase cathepsin L in Schistosoma mansoni. Mol Biochem Parasitol. 1995;73:7–18.
Article
CAS
PubMed
Google Scholar
Britton C, Murray L. A cathepsin L protease essential for Caenorhabditis elegans embryogenesis is functionally conserved in parasitic nematodes. Mol Biochem Parasitol. 2002;122:21–33.
Article
CAS
PubMed
Google Scholar
Pinlaor P, Kaewpitoon N, Laha T, Sripa B, Kaewkes S, Morales ME, et al. Cathepsin F cysteine protease of the human liver fluke. PLoS Negl Trop Dis. 2009;3:e398.
Article
PubMed
PubMed Central
Google Scholar
Ogawa K. Diseases of cultured marine fishes caused by Platyhelminthes (Monogenea, Digenea, Cestoda). Parasitology. 2015;142:178–95.
Article
CAS
PubMed
Google Scholar