Knope K, Doggett SL, Jansen CC, Johansen CA, Kurucz N, Feldman R, et al. Arboviral diseases and malaria in Australia, 2014–15: Annual report of the National Arbovirus and Malaria Advisory Committee. Commun Dis Intell. 2018;2019:43.
Google Scholar
Dehhaghi M, Kazemi Shariat Panahi H, Holmes EC, Hudson BJ, Schloeffel R, Guillemin GJ. Human tick-borne diseases in Australia. Front Cell Infect Microbiol. 2019;9:3.
Article
PubMed
PubMed Central
Google Scholar
Madani TA. Alkhumra virus infection, a new viral hemorrhagic fever in Saudi Arabia. J Infect. 2005;51:91–7.
Article
PubMed
Google Scholar
Vorou R, Pierroutsakos IN, Maltezou HC. Crimean-Congo hemorrhagic fever. Curr Opin Infect Dis. 2007;20:495–500.
Article
PubMed
Google Scholar
Savage HM, Godsey MS Jr., Lambert A, Panella NA, Burkhalter KL, Harmon JR, et al. First detection of Heartland virus (Bunyaviridae: Phlebovirus) from field collected arthropods. Am J Trop Med Hyg. 2013;89:445–52.
Chumakov MP, Sarmanova ES, Bychkova MV, Bannova GG, Pivanova GP, Karpovich LG, et al. Identification of Kemerovo tick-borne fever virus and its antigenic independence. Fed Proc Transl Suppl. 1964;23:852–4.
CAS
PubMed
Google Scholar
Wang M, Zuo J, Hu K. Identification of severe fever with thrombocytopenia syndrome virus in ticks collected from patients. Int J Infect Dis. 2014;29:82–3.
Article
PubMed
Google Scholar
Barker SC, Walker AR, Campelo D. A list of the 70 species of Australian ticks; diagnostic guides to and species accounts of Ixodes holocyclus (paralysis tick), Ixodes cornuatus (southern paralysis tick) and Rhipicephalus australis (Australian cattle tick); and consideration of the place of Australia in the evolution of ticks with comments on four controversial ideas. Int J Parasitol. 2014;44:941–53.
Article
PubMed
Google Scholar
Doherty RL, Carley JG, Murray MD, Main AJ Jr, Kay BH, Domrow R. Isolation of arboviruses (Kemerovo group, Sakhalin group) from Ixodes uriae collected at Macquarie Island, Southern ocean. Am J Trop Med Hyg. 1975;24:521–6.
Article
CAS
PubMed
Google Scholar
St George TD, Doherty RL, Carley JG, Filippich C, Brescia A, Casals J, et al. The isolation of arboviruses including a new flavivirus and a new Bunyavirus from Ixodes (Ceratixodes) uriae (Ixodoidea: Ixodidae) collected at Macquarie Island, Australia, 1975–1979. Am J Trop Med Hyg. 1985;34:406–12.
Article
CAS
PubMed
Google Scholar
St George TD, Standfast HA, Doherty RL, Carley JG, Fillipich C, Brandsma J. The isolation of Saumarez Reef virus, a new flavivirus, from bird ticks Ornithodoros capensis and Ixodes eudyptidis in Australia. Aust J Exp Biol Med Sci. 1977;55:493–9.
Article
CAS
PubMed
Google Scholar
Grard G, Moureau G, Charrel RN, Lemasson JJ, Gonzalez JP, Gallian P, et al. Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy. Virology. 2007;361:80–92.
Article
CAS
PubMed
Google Scholar
Palacios G, Savji N, Travassos da Rosa A, Guzman H, Yu X, Desai A, et al. Characterization of the Uukuniemi virus group (Phlebovirus: Bunyaviridae): evidence for seven distinct species. J Virol. 2013;87:3187.
Article
CAS
PubMed
PubMed Central
Google Scholar
Huang B, Firth C, Watterson D, Allcock R, Colmant AMG, Hobson-Peters J, et al. Genetic characterization of archived bunyaviruses and their potential for emergence in Australia. Emerg Infect Dis. 2016;22:833–40.
Article
CAS
PubMed
PubMed Central
Google Scholar
Major L, Linn ML, Slade RW, Schroder WA, Hyatt AD, Gardner J, et al. Ticks associated with Macquarie island penguins carry arboviruses from four genera. PLoS ONE. 2009;4:e4375.
Article
PubMed
PubMed Central
CAS
Google Scholar
St George TD, Cybinski DH, Main AJ, McKilligan N, Kemp DH. Isolation of a new arbovirus from the tick Argas robertsi from a cattle egret (Bubulcus ibis coromandus) colony in Australia. Aust J Biol Sci. 1984;37:85–9.
Article
CAS
PubMed
Google Scholar
Gauci PJ, McAllister J, Mitchell IR, Cybinski D, St George T, Gubala AJ. Genomic characterisation of Vinegar Hill virus, an Australian nairovirus isolated in 1983 from Argas robertsi ticks collected from cattle egrets. Viruses. 2017;9:373.
Article
PubMed Central
CAS
Google Scholar
Doherty RL, Kay BH, Carley JG, Filippich C. Isolation of virus strains related to kao shuan virus from Argas robertsi in northern territory, Australia. Search. 1976;7:484–6.
Google Scholar
Humphery-Smith I, Cybinski DH, Byrnes KA, St George TD. Seroepidemiology of arboviruses among seabirds and island residents of the Great Barrier Reef and Coral Sea. Epidemiol Infect. 1991;107:435–40.
Article
CAS
PubMed
PubMed Central
Google Scholar
Harvey E, Rose K, Eden JS, Lo N, Abeyasuriya T, Shi M, et al. Extensive diversity of RNA viruses in Australian ticks. J Virol. 2018;17:e01358-e1418.
Google Scholar
Chandra S, Harvey E, Emery D, Holmes EC, Šlapeta J. Unbiased characterization of the microbiome and virome of questing ticks. Front Microbiol. 2021;12:627327.
Article
PubMed
PubMed Central
Google Scholar
Vasilakis N, Tesh RB, Popov VL, Widen SG, Wood TG, Forrester NL, et al. Exploiting the legacy of the arbovirus hunters. Viruses. 2019;11:471.
Article
PubMed Central
Google Scholar
O’Brien CA, Hobson-Peters J, Yam AW, Colmant AM, McLean BJ, Prow NA, et al. Viral RNA intermediates as targets for detection and discovery of novel and emerging mosquito-borne viruses. PLoS Negl Trop Dis. 2015;9:e0003629.
Article
PubMed
PubMed Central
CAS
Google Scholar
Warrilow D, Huang B, Newton ND, Harrison JJ, Johnson KN, Chow WK, et al. The taxonomy of an Australian nodavirus isolated from mosquitoes. PLoS ONE. 2019;13:e0210029.
Article
CAS
Google Scholar
McLean BJ, Hobson-Peters J, Webb CE, Watterson D, Prow NA, Nguyen HD, et al. A novel insect-specific flavivirus replicates only in Aedes-derived cells and persists at high prevalence in wild Aedes vigilax populations in Sydney, Australia. Virology. 2015;486:272–83.
Article
CAS
PubMed
Google Scholar
Harrison JJ, Warrilow D, McLean BJ, Watterson D, O’Brien CA, Colmant AM, et al. A new orbivirus isolated from mosquitoes in North-Western Australia shows antigenic and genetic similarity to Corriparta virus but does not replicate in vertebrate cells. Viruses. 2016;8:141.
Article
PubMed Central
CAS
Google Scholar
O’Brien CA, Pegg CL, Nouwens AS, Bielefeldt-Ohmann H, Huang B, Warrilow D, et al. A unique relative of Rotifer birnavirus isolated from Australian mosquitoes. Viruses. 2020;12:1056.
Article
CAS
PubMed Central
Google Scholar
O’Brien CA, McLean BJ, Colmant AMG, Harrison JJ, Hall-Mendelin S, van den Hurk AF, et al. Discovery and characterisation of Castlerea virus, a new species of negevirus isolated in Australia. Evol Bioinform Online. 2017;13:1–14.
CAS
Google Scholar
Colmant AMG, O’Brien CA, Newton ND, Watterson D, Hardy J, et al. Novel monoclonal antibodies against Australian strains of negeviruses and insights into virus structure, replication and host -restriction. J Gen Virol. 2020;101:440–52.
Article
CAS
PubMed
Google Scholar
Colmant AMG, Bielefeldt-Ohmann H, Hobson-Peters J, Suen WW, O’Brien CA, van den Hurk AF, et al. A newly discovered flavivirus in the yellow fever virus group displays restricted replication in vertebrates. J Gen Virol. 2016;97:1087–93.
Article
CAS
PubMed
Google Scholar
Lawrie CH, Uzcátegui NY, Armesto M, Bell-Sakyi L, Gould EA. Susceptibility of mosquito and tick cell lines to infection with various flaviviruses. Med Vet Entomol. 2004;18:268–74.
Article
CAS
PubMed
Google Scholar
Bell-Sakyi L, Kohl A, Bente DA, Fazakerley JK. Tick cell lines for study of Crimean-Congo hemorrhagic fever virus and other arboviruses. Vector Borne Zoonotic Dis. 2011;12:769–81.
Article
PubMed
Google Scholar
Matsuno K, Kajihara M, Nakao R, Nao N, Mori-Kajihara A, Muramatsu M, et al. The unique phylogenetic position of a novel tick-borne phlebovirus ensures an Ixodid origin of the genus Phlebovirus. mSphere. 2018;3.
O’Brien CA, Hall-Mendelin S, Hobson-Peters J, Deliyannis G, Allen A, Lew-Tabor A, et al. Discovery of a novel iflavirus sequence in the eastern paralysis tick Ixodes holocyclus. Arch Virol. 2018;163:2451.
Article
CAS
PubMed
Google Scholar
Munderloh UG, Kurtti TJ. Formulation of medium for tick cell culture. Exp Appl Acarol. 1989;7:219–29.
Article
CAS
PubMed
Google Scholar
Reed LJ, Muench H. A simple method of estimating fifty percent endpoints. Am J Epidemiol. 1938;27:493–7.
Article
Google Scholar
Bailey UM, Jamaluddin MF, Schulz BL. Analysis of congenital disorder of glycosylation-Id in a yeast model system shows diverse site-specific under-glycosylation of glycoproteins. J Proteome Res. 2012;11:5376–83.
Article
CAS
PubMed
Google Scholar
Colmant AMG, Hall-Mendelin S, Ritchie SA, Bielefeldt-Ohmann H, Harrison JJ, Newton ND, et al. The recently identified flavivirus Bamaga virus is transmitted horizontally by Culex mosquitoes and interferes with West Nile virus replication in vitro and transmission in vivo. PLoS Negl Trop Dis. 2018;12:e0006886.
Article
CAS
PubMed
PubMed Central
Google Scholar
Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, et al. The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Res. 2019;47:W636–41.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gupta RaB S. Prediction of glycosylation across the human proteome and the correlation to protein function. Pac Symp Biocomput. 2002;7:310–22.
Google Scholar
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39:W29–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
Duckert P, Brunak S, Blom N. Prediction of proprotein convertase cleavage sites. Protein Eng Design Selection. 2004;17:107–12.
Article
CAS
Google Scholar
Miller M, Pfeiffer W, Schwartz T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE); 14/11/2010; New Orleans2010. p. 1–8.
Katoh K, Kuma K-I, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33.
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Meth. 2012;9:772.
Article
CAS
Google Scholar
Rodriguez-Valle M, McAlister S, Moolhuijzen PM, Booth M, Agnew K, Ellenberger C, et al. Immunomic investigation of holocyclotoxins to produce the first protective anti-venom vaccine against the Australian paralysis tick, Ixodes holocyclus. Front Immunol. 2021;12.
Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJE. The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc. 2015;10:845.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, et al. UCSF Chimera–a visualization system for exploratory research and analysis. J Comput Chem. 2004;25:1605–12.
Article
CAS
PubMed
Google Scholar
Ferron F, Li Z, Danek EI, Luo D, Wong Y, Coutard B, et al. The hexamer structure of the Rift Valley fever virus nucleoprotein suggests a mechanism for its assembly into ribonucleoprotein complexes. PLoS Pathog. 2011;7:e1002030.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sun Y, Li J, Gao GF, Tien P, Liu W. Bunyavirales ribonucleoproteins: the viral replication and transcription machinery. Crit Rev Microbiol. 2018;44:522–40.
Article
PubMed
Google Scholar
Frost MJ, Zhang J, Edmonds JH, Prow NA, Gu X, Davis R, et al. Characterization of virulent West Nile virus Kunjin strain, Australia, 2011. Emerg Infect Dis. 2012;18:792–800.
Article
CAS
PubMed
PubMed Central
Google Scholar
Schönborn J, Oberstrass J, Breyel E, Tittgen J, Schumacher J, Lukacs N. Monoclonal antibodies to double-stranded RNA as probes of RNA structure in crude nucleic acid extracts. Nucleic Acids Res. 1991;19:2993–3000.
Article
PubMed
PubMed Central
Google Scholar
Wille M, Harvey E, Shi M, Gonzalez-Acuña D, Holmes EC, Hurt AC. Sustained RNA virome diversity in Antarctic penguins and their ticks. Isme J. 2020;14:1768–82.
Article
PubMed
PubMed Central
Google Scholar
Ong C, Rodriguez-Valle M, Moolhuijzen P, Barrero R, Hunter A, Szabo T, et al. Exploring the transcriptomic data of the Australian paralysis tick, Ixodes holocyclus. GSTF J Vet Sci. 2016;3:1–10.
Google Scholar
Pettersson JHO, Ellström P, Ling J, Nilsson I, Bergström S, González-Acuña D, et al. Circumpolar diversification of the Ixodes uriae tick virome. PLoS Pathog. 2020;16:e1008759.
Article
CAS
PubMed
PubMed Central
Google Scholar
Olal D, Dick A, Woods VL Jr, Liu T, Li S, Devignot S, et al. Structural insights into RNA encapsidation and helical assembly of the Toscana virus nucleoprotein. Nucleic Acids Res. 2014;42:6025–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang J, Selleck P, Yu M, Ha W, Rootes C, Gales R, et al. Novel phlebovirus with zoonotic potential isolated from ticks, Australia. Emerg Infect Dis. 2014;20:1040–3.
Article
PubMed
PubMed Central
Google Scholar
Arnal A, Gómez-Díaz E, Cerdà-Cuéllar M, Lecollinet S, Pearce-Duvet J, Busquets N, et al. Circulation of a Meaban-like virus in Yellow-legged gulls and seabird ticks in the Western Mediterranean Basin. PLoS ONE. 2014;9:e89601.
Article
PubMed
PubMed Central
CAS
Google Scholar
Chastel C, Main AJ, Guiguen C, le Lay G, Quillien MC, Monnat JY, et al. The isolation of Meaban virus, a new flavivirus from the seabird tick Ornithodoros (Alectorobius) maritimus in France. Arch Virol. 1985;83:129–40.
Article
CAS
PubMed
Google Scholar
Bell-Sakyi L, Růzek D, Gould EA. Cell lines from the soft tick Ornithodoros moubata. Exp Appl Acarol. 2009;49:209–19.
Article
PubMed
PubMed Central
Google Scholar
Garcia S, Billecocq A, Crance J-M, Munderloh U, Garin D, Bouloy M. Nairovirus RNA sequences expressed by a Semliki Forest virus replicon induce RNA interference in tick cells. J Virol. 2005;79:8942.
Article
CAS
PubMed
PubMed Central
Google Scholar
Offerdahl DK, Dorward DW, Hansen BT, Bloom ME. A three-dimensional comparison of tick-borne flavivirus infection in mammalian and tick cell lines. PLoS ONE. 2012;7:e47912.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yau W-L, Nguyen-Dinh V, Larsson E, Lindqvist R, Överby AK, Lundmark R. Model system for the formation of tick-borne encephalitis virus replication compartments without viral RNA replication. J Virol. 2019;93:e00292-e319.
Article
CAS
PubMed
PubMed Central
Google Scholar
Miorin L, Romero-Brey I, Maiuri P, Hoppe S, Krijnse-Locker J, Bartenschlager R, et al. Three-dimensional architecture of tick-borne encephalitis virus replication sites and trafficking of the replicated RNA. J Virol. 2013;87:6469.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gillespie LK, Hoenen A, Morgan G, Mackenzie JM. The endoplasmic reticulum provides the membrane platform for biogenesis of the flavivirus replication complex. J Virol. 2010;84:10438.
Article
CAS
PubMed
PubMed Central
Google Scholar
Arakawa M, Morita E. Flavivirus replication organelle biogenesis in the endoplasmic reticulum: comparison with other single-stranded positive-sense RNA viruses. Int J Mol Sci. 2019;20:2336.
Article
CAS
PubMed Central
Google Scholar
Belaganahalli MN, Maan S, Maan NS, Brownlie J, Tesh R, Attoui H, et al. Genetic characterization of the tick-borne orbiviruses. Viruses. 2015;7:2185–209.
Article
CAS
PubMed
PubMed Central
Google Scholar
Attoui H, Mertens PPC, Becnel J, Belaganahalli S, Bergoin M, Brussaard CP, et al. Family Reoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, editors., et al., Virus taxonomy classification and nomenclature of viruses, ninth report of the international committee on taxonomy of viruses. San Diego: Elsevier; 2011. p. 541–637.
Google Scholar
Tokarz R, Williams SH, Sameroff S, Sanchez Leon M, Jain K, Lipkin WI. Virome analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses. J Virol. 2014;88:11480.
Article
PubMed
PubMed Central
CAS
Google Scholar
Khromykh AA, Kenney MT, Westaway EG. trans-Complementation of flavivirus RNA polymerase gene NS5 by using Kunjin virus replicon-expressing BHK cells. J Virol. 1998;72:7270–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gentry MK, Henchal EA, McCown JM, Brandt WE, Dalrymple JM. Identification of distinct antigenic determinants on dengue-2 virus using monoclonal antibodies. Am J Trop Med Hyg. 1982;31:548–55.
Article
CAS
PubMed
Google Scholar
Hall RA, Kay BH, Burgess GW, Clancy P, Fanning ID. Epitope analysis of the envelope and non-structural glycoproteins of Murray Valley Encephalitis Virus. J Gen Virol. 1990;71:2923–30.
Article
CAS
PubMed
Google Scholar
Thibodeaux BA, Roehrig JT. Development of a human-murine chimeric immunoglobulin M antibody for use in the serological detection of human flavivirus antibodies. Clin Vaccine Immunol. 2009;16:679.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hall RA, Broom AK, Hartnett AC, Howard MJ, Mackenzie JS. Immunodominant epitopes on the NS1 protein of MVE and KUN viruses serve as targets for a blocking ELISA to detect virus-specific antibodies in sentinel animal serum. J Virol Meth. 1995;51:201–10.
Article
CAS
Google Scholar
Macdonald J, Poidinger M, Mackenzie JS, Russell RC, Doggett S, Broom AK, et al. Molecular phylogeny of Edge Hill virus supports its position in the yellow fever virus group and identifies a new genetic variant. Evol Bioinform Online. 2010;6:91–6.
Article
PubMed
PubMed Central
Google Scholar
Piyasena TBH, Newton ND, Hobson-Peters J, Vet LJ, Setoh YX, Bielefeldt-Ohmann H, et al. Chimeric viruses of the insect-specific flavivirus Palm Creek with structural proteins of vertebrate-infecting flaviviruses identify barriers to replication of insect-specific flaviviruses in vertebrate cells. J Gen Virol. 2019;100:1580–6.
Article
CAS
PubMed
Google Scholar
Belhouchet M, Mohd Jaafar F, Tesh R, Grimes J, Maan S, Mertens PPC, et al. Complete sequence of Great Island virus and comparison with the T2 and outer-capsid proteins of Kemerovo, Lipovnik and Tribec viruses (genus Orbivirus, family Reoviridae). J Gen Virol. 2010;91:2985–93.
Article
CAS
PubMed
Google Scholar
Dilcher M, Weidmann M. Confusions in orbivirus protein classification. Virol J. 2012;9:166–222.
Article
PubMed
PubMed Central
Google Scholar